{ "type": "genome", "identifier": "GCF_019397265.1", "organism": "Nonomuraea coxensis DSM 45129", "title": "Nonomuraea coxensis DSM 45129", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019397265.1", "bioproject": "PRJNA224116", "biosample": "SAMN17379543", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1122611", "species_taxid": "404386", "organism_name": "Nonomuraea coxensis DSM 45129", "infraspecific_name": "strain=DSM 45129", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/29", "asm_name": "ASM1939726v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_019397265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/397/265/GCF_019397265.1_ASM1939726v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9073954", "genome_size_ungapped": "9073954", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019397265.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "8555", "protein_coding_gene_count": "8386", "non_coding_gene_count": "76", "pubmed_id": "33913701" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-29", "dateModified": "2021-07-29", "datePublished": "2021-07-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea coxensis DSM 45129" ], "sample_taxid": [ "1122611" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Bangladesh: Coxs Bazar" ], "sample_host_location_id": [], "data_size": "2.411 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.36, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9073954", "Number of Sequences": "1", "Longest Sequences (bp)": "9073954", "N50 (bp)": "9073954", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.2", "Number of CDSs": "8622", "Average Protein Length": "321.3", "Coding Ratio (%)": "91.6", "Number of rRNAs": "15", "Number of tRNAs": "74", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea coxensis", "strain": "strain=DSM 45129", "accession": "GCA_019397265.1", "taxid": 404386, "species_taxid": 404386, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3022, "total_fragments": 3024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea coxensis", "strain": "strain=DSM 45129", "accession": "GCA_000379885.1", "taxid": 404386, "species_taxid": 404386, "relation_to_type": "type", "validated": true, "ani": 99.9671, "matched_fragments": 2944, "total_fragments": 3024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea wenchangensis", "strain": "strain=CGMCC 4.5598", "accession": "GCA_900111685.1", "taxid": 568860, "species_taxid": 568860, "relation_to_type": "type", "validated": true, "ani": 94.1618, "matched_fragments": 2531, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 85.3075, "matched_fragments": 2010, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea polychroma", "strain": "strain=DSM 43925", "accession": "GCA_004011505.1", "taxid": 46176, "species_taxid": 46176, "relation_to_type": "type", "validated": true, "ani": 85.2915, "matched_fragments": 2041, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea turkmeniaca", "strain": "strain=DSM 43926", "accession": "GCA_005889735.1", "taxid": 103838, "species_taxid": 103838, "relation_to_type": "type", "validated": true, "ani": 85.2503, "matched_fragments": 1937, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 85.0697, "matched_fragments": 2195, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 84.9907, "matched_fragments": 2045, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 84.9698, "matched_fragments": 2042, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 84.7627, "matched_fragments": 2145, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea angiospora", "strain": "strain=DSM 43173", "accession": "GCA_014873145.1", "taxid": 46172, "species_taxid": 46172, "relation_to_type": "type", "validated": true, "ani": 84.7328, "matched_fragments": 2133, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea spiralis", "strain": "strain=JCM 3286", "accession": "GCA_014648435.1", "taxid": 46182, "species_taxid": 46182, "relation_to_type": "type", "validated": true, "ani": 84.4635, "matched_fragments": 2005, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 83.7768, "matched_fragments": 1193, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea cavernae", "strain": "strain=SYSU K10005", "accession": "GCA_020215905.1", "taxid": 2045107, "species_taxid": 2045107, "relation_to_type": "type", "validated": true, "ani": 83.7015, "matched_fragments": 1719, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea indica", "strain": "strain=DRQ-2", "accession": "GCA_002850745.1", "taxid": 1581193, "species_taxid": 1581193, "relation_to_type": "type", "validated": true, "ani": 83.2823, "matched_fragments": 1709, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 82.7927, "matched_fragments": 1870, "total_fragments": 3024, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 3.36, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCF_000379885.1", "gtdb_species": "s__Nonomuraea coxensis", "ani": 99.9671, "matched_fragments": 2944, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900111685.1", "gtdb_species": "s__Nonomuraea wenchangensis", "ani": 94.1528, "matched_fragments": 2533, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008065375.1", "gtdb_species": "s__Nonomuraea sp008065375", "ani": 85.5638, "matched_fragments": 2051, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004011505.1", "gtdb_species": "s__Nonomuraea polychroma", "ani": 85.373, "matched_fragments": 2025, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005893125.1", "gtdb_species": "s__Nonomuraea sp005893125", "ani": 85.3321, "matched_fragments": 2003, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014207985.1", "gtdb_species": "s__Nonomuraea rubra", "ani": 85.088, "matched_fragments": 2191, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003001935.1", "gtdb_species": "s__Nonomuraea fuscirosea", "ani": 85.0289, "matched_fragments": 2098, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014873145.1", "gtdb_species": "s__Nonomuraea angiospora", "ani": 84.7473, "matched_fragments": 2125, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204795.1", "gtdb_species": "s__Nonomuraea jabiensis", "ani": 84.735, "matched_fragments": 2151, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648435.1", "gtdb_species": "s__Nonomuraea spiralis", "ani": 84.5001, "matched_fragments": 1998, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014646355.1", "gtdb_species": "s__Nonomuraea cavernae", "ani": 83.6495, "matched_fragments": 1734, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002850745.1", "gtdb_species": "s__Nonomuraea indica", "ani": 83.2794, "matched_fragments": 1709, "total_fragments": 3024, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.092, "cell_length": 0.155, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 8996124.0, "gc_content": 72.2, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Nonomuraea", "coxensis", "DSM", "45129" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }