{
    "type": "genome",
    "identifier": "GCF_019400875.1",
    "organism": "Streptomyces anatolicus",
    "title": "Streptomyces anatolicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ondokuz Mayis University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019400875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13319870",
        "wgs_master": "WMBF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2675858",
        "species_taxid": "2675858",
        "organism_name": "Streptomyces anatolicus",
        "infraspecific_name": "strain=BG9H",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/29",
        "asm_name": "ASM1940087v1",
        "asm_submitter": "Ondokuz Mayis University",
        "gbrs_paired_asm": "GCA_019400875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/400/875/GCF_019400875.1_ASM1940087v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7259623",
        "genome_size_ungapped": "7259623",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "881",
        "contig_count": "881",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019400875.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "6661",
        "protein_coding_gene_count": "6367",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-29",
    "dateModified": "2021-07-29",
    "datePublished": "2021-07-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces anatolicus"
        ],
        "sample_taxid": [
            "2675858"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Turkey"
        ],
        "sample_host_location_id": [],
        "data_size": "1.981 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7259623",
        "Number of Sequences": "881",
        "Longest Sequences (bp)": "79661",
        "N50 (bp)": "13615",
        "Gap Ratio (%)": "0.000014",
        "GCcontent (%)": "71.2",
        "Number of CDSs": "5816",
        "Average Protein Length": "318.5",
        "Coding Ratio (%)": "76.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces alboniger",
                "strain": "strain=NRRL B-1832",
                "accession": "GCA_001418385.1",
                "taxid": 132473,
                "species_taxid": 132473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.5022,
                "matched_fragments": 1492,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces alboniger",
                "strain": "strain=ATCC 12461",
                "accession": "GCA_008704395.1",
                "taxid": 132473,
                "species_taxid": 132473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.4968,
                "matched_fragments": 1648,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces silaceus",
                "strain": "strain=NRRL B-24166",
                "accession": "GCA_001419745.1",
                "taxid": 545123,
                "species_taxid": 545123,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.5208,
                "matched_fragments": 1418,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces alfalfae",
                "strain": "strain=XY25",
                "accession": "GCA_004212445.1",
                "taxid": 1642299,
                "species_taxid": 1642299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3123,
                "matched_fragments": 1470,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces atriruber",
                "strain": "strain=NRRL B-24165",
                "accession": "GCA_001418325.1",
                "taxid": 545121,
                "species_taxid": 545121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2886,
                "matched_fragments": 1419,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces alfalfae",
                "strain": "strain=XY25",
                "accession": "GCA_004127445.1",
                "taxid": 1642299,
                "species_taxid": 1642299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1971,
                "matched_fragments": 1519,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces kanamyceticus",
                "strain": "strain=ATCC 12853",
                "accession": "GCA_008704495.1",
                "taxid": 1967,
                "species_taxid": 1967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9035,
                "matched_fragments": 1536,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces kanamyceticus",
                "strain": "strain=NRRL B-2535",
                "accession": "GCA_001418465.1",
                "taxid": 1967,
                "species_taxid": 1967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.8253,
                "matched_fragments": 1417,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces durmitorensis",
                "strain": "strain=MS405",
                "accession": "GCA_023498005.1",
                "taxid": 319947,
                "species_taxid": 319947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2874,
                "matched_fragments": 1499,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spectabilis",
                "strain": "strain=KCTC9218",
                "accession": "GCA_022698305.1",
                "taxid": 68270,
                "species_taxid": 68270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5669,
                "matched_fragments": 1488,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces aurantiacus",
                "strain": "strain=NRRL ISP-5412",
                "accession": "GCA_001418335.1",
                "taxid": 47760,
                "species_taxid": 47760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9732,
                "matched_fragments": 1101,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces deccanensis",
                "strain": "strain=KCTC 19241",
                "accession": "GCA_022385335.1",
                "taxid": 424188,
                "species_taxid": 424188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5804,
                "matched_fragments": 1235,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces glomeratus",
                "strain": "strain=DSM 41457",
                "accession": "GCA_021462825.1",
                "taxid": 284452,
                "species_taxid": 284452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.559,
                "matched_fragments": 1113,
                "total_fragments": 1991,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003945545.1",
                "gtdb_species": "s__Streptomyces sp003945545",
                "ani": 95.9884,
                "matched_fragments": 1836,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008704395.1",
                "gtdb_species": "s__Streptomyces alboniger",
                "ani": 92.509,
                "matched_fragments": 1647,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "96.83",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_004010275.1",
                "gtdb_species": "s__Streptomyces huasconensis",
                "ani": 90.2276,
                "matched_fragments": 1524,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016905445.1",
                "gtdb_species": "s__Streptomyces sp016905445",
                "ani": 90.0821,
                "matched_fragments": 1510,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001419745.1",
                "gtdb_species": "s__Streptomyces silaceus",
                "ani": 88.5555,
                "matched_fragments": 1415,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001418325.1",
                "gtdb_species": "s__Streptomyces atriruber",
                "ani": 88.3257,
                "matched_fragments": 1415,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004127445.1",
                "gtdb_species": "s__Streptomyces alfalfae",
                "ani": 88.2094,
                "matched_fragments": 1517,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_002556545.1",
                "gtdb_species": "s__Streptomyces formicae",
                "ani": 87.9482,
                "matched_fragments": 1542,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004684775.1",
                "gtdb_species": "s__Streptomyces sp004684775",
                "ani": 86.4235,
                "matched_fragments": 1306,
                "total_fragments": 1991,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.757,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "anatolicus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}