{ "type": "genome", "identifier": "GCF_019402665.1", "organism": "Bradyrhizobium canariense", "title": "Bradyrhizobium canariense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LMU Munich", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019402665.1", "bioproject": "PRJNA224116", "biosample": "SAMN12600545", "wgs_master": "VSST00000000.1", "refseq_category": "reference genome", "taxid": "255045", "species_taxid": "255045", "organism_name": "Bradyrhizobium canariense", "infraspecific_name": "strain=BTA-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/29", "asm_name": "ASM1940266v1", "asm_submitter": "LMU Munich", "gbrs_paired_asm": "GCA_019402665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/402/665/GCF_019402665.1_ASM1940266v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8561472", "genome_size_ungapped": "8561417", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "154", "contig_count": "154", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019402665.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "8195", "protein_coding_gene_count": "7882", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-29", "dateModified": "2021-07-29", "datePublished": "2021-07-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium canariense" ], "sample_taxid": [ "255045" ], "sample_host_organism": [ "Chamaecytisus prolifer" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Tenerife" ], "sample_host_location_id": [], "data_size": "2.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8561472", "Number of Sequences": "154", "Longest Sequences (bp)": "416110", "N50 (bp)": "130886", "Gap Ratio (%)": "0.000689", "GCcontent (%)": "63.2", "Number of CDSs": "8157", "Average Protein Length": "291.9", "Coding Ratio (%)": "83.4", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium canariense", "strain": "strain=BTA-1", "accession": "GCA_019402665.1", "taxid": 255045, "species_taxid": 255045, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2776, "total_fragments": 2781, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA110", "accession": "GCA_000011365.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 88.875, "matched_fragments": 1970, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 88.8134, "matched_fragments": 1994, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 88.7488, "matched_fragments": 1978, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000284375.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 88.6275, "matched_fragments": 1940, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=NBRC 14783", "accession": "GCA_006539645.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 88.5937, "matched_fragments": 1930, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000472985.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 88.5838, "matched_fragments": 1967, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.5736, "matched_fragments": 1742, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium ottawaense", "strain": "strain=OO99", "accession": "GCA_002278135.2", "taxid": 931866, "species_taxid": 931866, "relation_to_type": "type", "validated": true, "ani": 88.4123, "matched_fragments": 1940, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cosmicum", "strain": "strain=58S1", "accession": "GCA_007290395.1", "taxid": 1404864, "species_taxid": 1404864, "relation_to_type": "type", "validated": true, "ani": 88.3941, "matched_fragments": 1812, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium symbiodeficiens", "strain": "strain=85S1MB", "accession": "GCA_002266465.2", "taxid": 1404367, "species_taxid": 1404367, "relation_to_type": "type", "validated": true, "ani": 88.3095, "matched_fragments": 1797, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium amphicarpaeae", "strain": "strain=39S1MB", "accession": "GCA_002266435.2", "taxid": 1404768, "species_taxid": 1404768, "relation_to_type": "type", "validated": true, "ani": 88.2563, "matched_fragments": 1805, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 88.2353, "matched_fragments": 1865, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium stylosanthis", "strain": "strain=BR 446", "accession": "GCA_001641335.1", "taxid": 1803665, "species_taxid": 1803665, "relation_to_type": "type", "validated": true, "ani": 88.2336, "matched_fragments": 1930, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 88.2158, "matched_fragments": 2009, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium zhanjiangense", "strain": "strain=CCBAU 51778", "accession": "GCA_004114935.1", "taxid": 1325107, "species_taxid": 1325107, "relation_to_type": "type", "validated": true, "ani": 87.994, "matched_fragments": 1951, "total_fragments": 2781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nanningense", "strain": "strain=CCBAU 53390", "accession": "GCA_004114535.1", "taxid": 1325118, 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