{ "type": "genome", "identifier": "GCF_019443985.1", "organism": "Liquorilactobacillus hordei DSM 19519", "title": "Liquorilactobacillus hordei DSM 19519", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technische Universitaet Muenchen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019443985.1", "bioproject": "PRJNA224116", "biosample": "SAMN14168551", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1423759", "species_taxid": "468911", "organism_name": "Liquorilactobacillus hordei DSM 19519", "infraspecific_name": "strain=DSM 19519", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/03", "asm_name": "ASM1944398v1", "asm_submitter": "Technische Universitaet Muenchen", "gbrs_paired_asm": "GCA_019443985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/443/985/GCF_019443985.1_ASM1944398v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2440903", "genome_size_ungapped": "2440603", "gc_percent": "35.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019443985.1-RS_2024_09_07", "annotation_date": "2024-09-07", "total_gene_count": "2442", "protein_coding_gene_count": "2300", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-03", "dateModified": "2021-08-03", "datePublished": "2021-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Liquorilactobacillus hordei DSM 19519" ], "sample_taxid": [ "1423759" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.681 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2440603", "Number of Sequences": "3", "Longest Sequences (bp)": "2240128", "N50 (bp)": "2240128", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.0", "Number of CDSs": "2394", "Average Protein Length": "290.3", "Coding Ratio (%)": "85.4", "Number of rRNAs": "18", "Number of tRNAs": "63", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Liquorilactobacillus hordei", "strain": "strain=DSM 19519", "accession": "GCA_019443985.1", "taxid": 468911, "species_taxid": 468911, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 807, "total_fragments": 812, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Liquorilactobacillus hordei", "strain": "strain=DSM 19519", "accession": "GCA_001434845.1", "taxid": 468911, "species_taxid": 468911, "relation_to_type": "type", "validated": true, "ani": 99.8751, "matched_fragments": 698, "total_fragments": 812, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Liquorilactobacillus mali", "strain": "strain=KCTC 3596", "accession": "GCA_000260415.1", "taxid": 1618, "species_taxid": 1618, "relation_to_type": "type", "validated": true, "ani": 82.7626, "matched_fragments": 521, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus mali", "strain": "strain=DSM 20444", "accession": "GCA_000276905.1", "taxid": 1618, "species_taxid": 1618, "relation_to_type": "type", "validated": true, "ani": 82.758, "matched_fragments": 410, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus mali", "strain": "strain=DSM 20444", "accession": "GCA_001436535.1", "taxid": 1618, "species_taxid": 1618, "relation_to_type": "type", "validated": true, "ani": 82.7394, "matched_fragments": 515, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus uvarum", "strain": "strain=DSM 19971", "accession": "GCA_001434935.1", "taxid": 303240, "species_taxid": 303240, "relation_to_type": "type", "validated": true, "ani": 78.7202, "matched_fragments": 128, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Liquorilactobacillus oeni", "strain": "strain=DSM 19972", "accession": "GCA_001436275.1", "taxid": 303241, "species_taxid": 303241, "relation_to_type": "type", "validated": true, "ani": 78.6869, "matched_fragments": 113, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus salivarius", "strain": "strain=ATCC 11741", "accession": "GCA_000159395.1", "taxid": 1624, "species_taxid": 1624, "relation_to_type": "type", "validated": true, "ani": 77.983, "matched_fragments": 73, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus salivarius", "strain": "strain=DSM 20554", "accession": "GCA_002079585.1", "taxid": 1624, "species_taxid": 1624, "relation_to_type": "type", "validated": true, "ani": 77.9343, "matched_fragments": 74, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus salivarius", "strain": "strain=DSM 20555", "accession": "GCA_001435955.1", "taxid": 1624, "species_taxid": 1624, "relation_to_type": "type", "validated": true, "ani": 77.8998, "matched_fragments": 70, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001434845.1", "gtdb_species": "s__Liquorilactobacillus hordei", "ani": 99.8751, "matched_fragments": 698, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000260415.1", "gtdb_species": "s__Liquorilactobacillus mali", "ani": 82.7441, "matched_fragments": 521, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001437155.1", "gtdb_species": "s__Liquorilactobacillus mali_A", "ani": 82.7219, "matched_fragments": 533, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001436735.1", "gtdb_species": "s__Liquorilactobacillus cacaonum", "ani": 80.4146, "matched_fragments": 326, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001436275.1", "gtdb_species": "s__Liquorilactobacillus oeni", "ani": 78.6867, "matched_fragments": 113, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001434935.1", "gtdb_species": "s__Liquorilactobacillus uvarum", "ani": 78.644, "matched_fragments": 132, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000255495.1", "gtdb_species": "s__Liquorilactobacillus vini", "ani": 77.9196, "matched_fragments": 82, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001435955.1", "gtdb_species": "s__Ligilactobacillus salivarius", "ani": 77.8998, "matched_fragments": 70, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.79", "num_clustered_genomes": 193, "status": "-" }, { "accession": "GCF_001434225.1", "gtdb_species": "s__Liquorilactobacillus nagelii", "ani": 77.6764, "matched_fragments": 127, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019114385.1", "gtdb_species": "s__Ligilactobacillus excrementigallinarum", "ani": 76.1811, "matched_fragments": 53, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Liquorilactobacillus", "hordei", "DSM", "19519" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }