{ "type": "genome", "identifier": "GCF_019457495.1", "organism": "Shewanella aegiceratis", "title": "Shewanella aegiceratis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019457495.1", "bioproject": "PRJNA224116", "biosample": "SAMN20447863", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2864203", "species_taxid": "2864203", "organism_name": "Shewanella aegiceratis", "infraspecific_name": "strain=FJAT-53532", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/06", "asm_name": "ASM1945749v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_019457495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/457/495/GCF_019457495.1_ASM1945749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4513739", "genome_size_ungapped": "4513739", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019457495.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "3943", "protein_coding_gene_count": "3809", "non_coding_gene_count": "126", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-06", "dateModified": "2021-08-06", "datePublished": "2021-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella aegiceratis" ], "sample_taxid": [ "2864203" ], "sample_host_organism": [ "sediment" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "1.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 96.88, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4513739", "Number of Sequences": "1", "Longest Sequences (bp)": "4513739", "N50 (bp)": "4513739", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.9", "Number of CDSs": "3869", "Average Protein Length": "333.1", "Coding Ratio (%)": "85.7", "Number of rRNAs": "25", "Number of tRNAs": "96", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella loihica", "strain": "strain=PV-4", "accession": "GCA_000016065.1", "taxid": 359303, "species_taxid": 359303, "relation_to_type": "type", "validated": true, "ani": 96.3455, "matched_fragments": 1458, "total_fragments": 1504, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella insulae", "strain": "strain=JBTF-M18", "accession": "GCA_009831655.1", "taxid": 2681496, "species_taxid": 2681496, "relation_to_type": "type", "validated": true, "ani": 90.7335, "matched_fragments": 1339, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella aquimarina", "strain": "strain=JCM 12193", "accession": "GCA_023349185.1", "taxid": 260365, "species_taxid": 260365, "relation_to_type": "type", "validated": true, "ani": 90.5893, "matched_fragments": 1325, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, "relation_to_type": "type", "validated": true, "ani": 84.641, "matched_fragments": 1181, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=KCTC 23556", "accession": "GCA_025449215.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 79.9659, "matched_fragments": 349, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella colwelliana", "strain": "strain=ATCC 39565", "accession": "GCA_000518705.1", "taxid": 23, "species_taxid": 23, "relation_to_type": "type", "validated": true, "ani": 79.8291, "matched_fragments": 531, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella salipaludis", "strain": "strain=SHSM-M6", "accession": "GCA_012911865.1", "taxid": 2723052, "species_taxid": 2723052, "relation_to_type": "type", "validated": true, "ani": 78.3575, "matched_fragments": 444, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella chilikensis", "strain": "strain=CCUG 57101", "accession": "GCA_023283475.1", "taxid": 558541, "species_taxid": 558541, "relation_to_type": "type", "validated": true, "ani": 78.1683, "matched_fragments": 413, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella corallii", "strain": "strain=DSM 21332", "accession": "GCA_023349125.1", "taxid": 560080, "species_taxid": 560080, "relation_to_type": "type", "validated": true, "ani": 78.0162, "matched_fragments": 279, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=CCUG 60900", "accession": "GCA_023283775.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 77.961, "matched_fragments": 325, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" } ], 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"num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000518705.1", "gtdb_species": "s__Shewanella colwelliana", "ani": 79.8368, "matched_fragments": 530, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003605125.1", "gtdb_species": "s__Shewanella algidipiscicola", "ani": 79.487, "matched_fragments": 490, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "98.64", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 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