{ "type": "genome", "identifier": "GCF_019457515.1", "organism": "Shewanella mesophila", "title": "Shewanella mesophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019457515.1", "bioproject": "PRJNA224116", "biosample": "SAMN20447909", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2864208", "species_taxid": "2864208", "organism_name": "Shewanella mesophila", "infraspecific_name": "strain=FJAT-53870", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/06", "asm_name": "ASM1945751v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_019457515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/457/515/GCF_019457515.1_ASM1945751v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4323583", "genome_size_ungapped": "4323583", "gc_percent": "45.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019457515.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "3831", "protein_coding_gene_count": "3669", "non_coding_gene_count": "127", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-06", "dateModified": "2021-08-06", "datePublished": "2021-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella mesophila" ], "sample_taxid": [ "2864208" ], "sample_host_organism": [ "sediment" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "1.226 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4323583", "Number of Sequences": "1", "Longest Sequences (bp)": "4323583", "N50 (bp)": "4323583", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.9", "Number of CDSs": "3712", "Average Protein Length": "330.1", "Coding Ratio (%)": "85.0", "Number of rRNAs": "25", "Number of tRNAs": "97", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella colwelliana", "strain": "strain=ATCC 39565", "accession": "GCA_000518705.1", "taxid": 23, "species_taxid": 23, "relation_to_type": "type", "validated": true, "ani": 82.3626, "matched_fragments": 752, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algidipiscicola", "strain": "strain=LMG 23746", "accession": "GCA_019655175.1", "taxid": 614070, "species_taxid": 614070, "relation_to_type": "type", "validated": true, "ani": 81.4452, "matched_fragments": 671, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algidipiscicola", "strain": "strain=LMG 23746", "accession": "GCA_003605125.1", "taxid": 614070, "species_taxid": 614070, "relation_to_type": "type", "validated": true, "ani": 81.4313, "matched_fragments": 700, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella loihica", "strain": "strain=PV-4", "accession": "GCA_000016065.1", "taxid": 359303, "species_taxid": 359303, "relation_to_type": "type", "validated": true, "ani": 80.5921, "matched_fragments": 559, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, "relation_to_type": "type", "validated": true, "ani": 80.2029, "matched_fragments": 620, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella aquimarina", "strain": "strain=JCM 12193", "accession": "GCA_023349185.1", "taxid": 260365, "species_taxid": 260365, "relation_to_type": "type", "validated": true, "ani": 80.0387, "matched_fragments": 567, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella insulae", "strain": "strain=JBTF-M18", "accession": "GCA_009831655.1", "taxid": 2681496, "species_taxid": 2681496, "relation_to_type": "type", "validated": true, "ani": 79.9703, "matched_fragments": 556, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella pealeana", "strain": "strain=ATCC 700345", "accession": "GCA_000018285.1", "taxid": 70864, "species_taxid": 70864, "relation_to_type": "type", "validated": true, "ani": 79.5579, "matched_fragments": 334, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=JCM 11561", "accession": "GCA_016765635.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 79.1825, "matched_fragments": 342, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 79.1006, "matched_fragments": 312, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=LMG 21406", "accession": "GCA_023283605.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 79.0647, "matched_fragments": 341, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=JCM 11561", "accession": "GCA_019654995.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 79.0079, "matched_fragments": 336, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella nanhaiensis", "strain": "strain=NR704-98", "accession": "GCA_019457885.1", "taxid": 2864872, "species_taxid": 2864872, "relation_to_type": "type", "validated": true, "ani": 78.8236, "matched_fragments": 363, "total_fragments": 1441, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella fidelis", "strain": "strain=ATCC BAA-318", "accession": "GCA_000518605.1", "taxid": 173509, "species_taxid": 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"0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003605125.1", "gtdb_species": "s__Shewanella algidipiscicola", "ani": 81.3944, "matched_fragments": 705, "total_fragments": 1441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "98.64", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000016065.1", "gtdb_species": "s__Shewanella loihica", "ani": 80.5919, "matched_fragments": 559, "total_fragments": 1441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.22", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.91", 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