{ "type": "genome", "identifier": "GCF_019457575.1", "organism": "Shewanella alkalitolerans", "title": "Shewanella alkalitolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019457575.1", "bioproject": "PRJNA224116", "biosample": "SAMN20447912", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2864209", "species_taxid": "2864209", "organism_name": "Shewanella alkalitolerans", "infraspecific_name": "strain=FJAT-54031", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/06", "asm_name": "ASM1945757v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_019457575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/457/575/GCF_019457575.1_ASM1945757v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4526391", "genome_size_ungapped": "4526391", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019457575.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "3951", "protein_coding_gene_count": "3814", "non_coding_gene_count": "128", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-06", "dateModified": "2021-08-06", "datePublished": "2021-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella alkalitolerans" ], "sample_taxid": [ "2864209" ], "sample_host_organism": [ "sediment" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "1.282 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4526391", "Number of Sequences": "1", "Longest Sequences (bp)": "4526391", "N50 (bp)": "4526391", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "3863", "Average Protein Length": "335.1", "Coding Ratio (%)": "85.8", "Number of rRNAs": "25", "Number of tRNAs": "97", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella loihica", "strain": "strain=PV-4", "accession": "GCA_000016065.1", "taxid": 359303, "species_taxid": 359303, "relation_to_type": "type", "validated": true, "ani": 96.2229, "matched_fragments": 1415, "total_fragments": 1508, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella aquimarina", "strain": "strain=JCM 12193", "accession": "GCA_023349185.1", "taxid": 260365, "species_taxid": 260365, "relation_to_type": "type", "validated": true, "ani": 90.6187, "matched_fragments": 1321, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella insulae", "strain": "strain=JBTF-M18", "accession": "GCA_009831655.1", "taxid": 2681496, "species_taxid": 2681496, "relation_to_type": "type", "validated": true, "ani": 90.6066, "matched_fragments": 1340, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, "relation_to_type": "type", "validated": true, "ani": 84.744, "matched_fragments": 1162, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=KCTC 23556", "accession": "GCA_025449215.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 80.0845, "matched_fragments": 349, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella colwelliana", "strain": "strain=ATCC 39565", "accession": "GCA_000518705.1", "taxid": 23, "species_taxid": 23, "relation_to_type": "type", "validated": true, "ani": 79.8531, "matched_fragments": 503, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algidipiscicola", "strain": "strain=LMG 23746", "accession": "GCA_003605125.1", "taxid": 614070, "species_taxid": 614070, "relation_to_type": "type", "validated": true, "ani": 79.444, "matched_fragments": 481, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella cyperi", "strain": "strain=FJAT-53720", "accession": "GCA_017354985.1", "taxid": 2814292, "species_taxid": 2814292, "relation_to_type": "type", "validated": true, "ani": 78.2993, "matched_fragments": 424, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=CCUG 60900", "accession": "GCA_023283775.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 78.1832, "matched_fragments": 323, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella corallii", "strain": "strain=DSM 21332", "accession": "GCA_023349125.1", "taxid": 560080, "species_taxid": 560080, "relation_to_type": "type", "validated": true, "ani": 78.1217, "matched_fragments": 270, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" } ], 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