{ "type": "genome", "identifier": "GCF_019457595.1", "organism": "Shewanella psychrotolerans", "title": "Shewanella psychrotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019457595.1", "bioproject": "PRJNA224116", "biosample": "SAMN20447899", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2864206", "species_taxid": "2864206", "organism_name": "Shewanella psychrotolerans", "infraspecific_name": "strain=FJAT-53749", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/06", "asm_name": "ASM1945759v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_019457595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/457/595/GCF_019457595.1_ASM1945759v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4368735", "genome_size_ungapped": "4368735", "gc_percent": "44.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019457595.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "3847", "protein_coding_gene_count": "3685", "non_coding_gene_count": "128", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-06", "dateModified": "2021-08-06", "datePublished": "2021-08-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella psychrotolerans" ], "sample_taxid": [ "2864206" ], "sample_host_organism": [ "sediment" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "1.243 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4368735", "Number of Sequences": "1", "Longest Sequences (bp)": "4368735", "N50 (bp)": "4368735", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.4", "Number of CDSs": "3737", "Average Protein Length": "330.3", "Coding Ratio (%)": "84.8", "Number of rRNAs": "25", "Number of tRNAs": "99", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marinintestina", "strain": "strain=LMG 21403", "accession": "GCA_023283845.1", "taxid": 190305, "species_taxid": 190305, "relation_to_type": "type", "validated": true, "ani": 78.8488, "matched_fragments": 326, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 78.7747, "matched_fragments": 318, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella baltica", "strain": "strain=NCTC10735", "accession": "GCA_900456975.1", "taxid": 62322, "species_taxid": 62322, "relation_to_type": "type", "validated": true, "ani": 78.649, "matched_fragments": 289, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=CGMCC 1.15339", "accession": "GCA_014641855.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 78.2392, "matched_fragments": 203, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 78.0912, "matched_fragments": 204, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella morhuae", "strain": "strain=ATCC BAA-1205", "accession": "GCA_900156405.1", "taxid": 365591, "species_taxid": 365591, "relation_to_type": "type", "validated": true, "ani": 77.9535, "matched_fragments": 245, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella profunda", 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95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000518705.1", "gtdb_species": "s__Shewanella colwelliana", "ani": 81.6616, "matched_fragments": 689, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003605125.1", "gtdb_species": "s__Shewanella algidipiscicola", "ani": 81.307, "matched_fragments": 669, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, 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