{ "type": "genome", "identifier": "GCF_019457885.1", "organism": "Shewanella nanhaiensis", "title": "Shewanella nanhaiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Insititute of Oceanology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019457885.1", "bioproject": "PRJNA224116", "biosample": "SAMN20496741", "wgs_master": "JAHZST000000000.1", "refseq_category": "reference genome", "taxid": "2864872", "species_taxid": "2864872", "organism_name": "Shewanella nanhaiensis", "infraspecific_name": "strain=NR704-98", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/07", "asm_name": "ASM1945788v1", "asm_submitter": "Insititute of Oceanology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_019457885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/457/885/GCF_019457885.1_ASM1945788v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5683156", "genome_size_ungapped": "5682961", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "103", "contig_count": "103", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019457885.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "4916", "protein_coding_gene_count": "4725", "non_coding_gene_count": "154", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-07", "dateModified": "2021-08-07", "datePublished": "2021-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella nanhaiensis" ], "sample_taxid": [ "2864872" ], "sample_host_organism": [], 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003966265.1", "gtdb_species": "s__Shewanella atlantica", "ani": 79.7308, "matched_fragments": 593, "total_fragments": 1862, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000018025.1", "gtdb_species": "s__Shewanella sediminis", "ani": 79.6498, "matched_fragments": 619, "total_fragments": 1862, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.227, "cell_length": 0.265, "doubling_h": 0.077, "growth_tmp": 22.402, "optimum_tmp": 22.248, "optimum_ph": 7.147, "genome_size": 4868941.65, "gc_content": 46.142, "coding_genes": 4161.776, "rRNA16S_genes": 9.437, "tRNA_genes": 107.731, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.333, "facultative_respiration": 0.565, "anaerobic_respiration": 0.021, "aerobic_respiration": 0.413, "mesophilic_range_tmp": 0.812, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.187, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Shewanella", "nanhaiensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }