{ "type": "genome", "identifier": "GCF_019492055.1", "organism": "Flavimaribacter sediminis", "title": "Flavimaribacter sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hohai Univercity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019492055.1", "bioproject": "PRJNA224116", "biosample": "SAMN20525562", "wgs_master": "JAICBX000000000.1", "refseq_category": "reference genome", "taxid": "2865987", "species_taxid": "2865987", "organism_name": "Flavimaribacter sediminis", "infraspecific_name": "strain=WL0058", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/09", "asm_name": "ASM1949205v1", "asm_submitter": "Hohai Univercity", "gbrs_paired_asm": "GCA_019492055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/492/055/GCF_019492055.1_ASM1949205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5691365", "genome_size_ungapped": "5691365", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019492055.1-RS_2024_08_19", "annotation_date": "2024-08-19", "total_gene_count": "5394", "protein_coding_gene_count": "5286", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-09", "dateModified": "2021-08-09", "datePublished": "2021-08-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavimaribacter sediminis" ], "sample_taxid": [ "2865987" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiangsu Province, Lusi Port, Nantong City" ], "sample_host_location_id": [], "data_size": "1.596 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5691365", "Number of Sequences": "13", "Longest Sequences (bp)": "1722695", "N50 (bp)": "1583138", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "5351", "Average Protein Length": "318.3", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nitratireductor pacificus", "strain": "strain=pht-3B", "accession": "GCA_000300335.1", "taxid": 1231180, "species_taxid": 1231180, "relation_to_type": "type", "validated": true, "ani": 77.7805, "matched_fragments": 286, 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"below_threshold" }, { "organism_name": "Ciceribacter thiooxidans", "strain": "strain=F43B", "accession": "GCA_014126615.1", "taxid": 1969821, "species_taxid": 1969821, "relation_to_type": "type", "validated": true, "ani": 77.6697, "matched_fragments": 240, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_002288525.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 77.5316, "matched_fragments": 267, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_000261485.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 77.5198, "matched_fragments": 260, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor soli", "strain": "strain=ZZ-1", "accession": "GCA_001050155.1", "taxid": 1670619, "species_taxid": 1670619, "relation_to_type": "type", "validated": true, "ani": 77.5017, "matched_fragments": 283, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 77.475, "matched_fragments": 296, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea halophila", "strain": "strain=KCTC 23107", "accession": "GCA_900220985.1", "taxid": 714899, "species_taxid": 714899, "relation_to_type": "type", "validated": true, "ani": 77.4528, "matched_fragments": 245, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea alexandrii", "strain": "strain=DSM 16655", "accession": "GCA_024105735.1", "taxid": 288436, "species_taxid": 288436, "relation_to_type": "type", "validated": true, "ani": 77.4411, "matched_fragments": 291, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 77.4236, "matched_fragments": 302, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=LMG 28313", "accession": "GCA_003601985.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 77.4152, "matched_fragments": 309, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium japonicum", "strain": "strain=MAFF 303099", "accession": "GCA_000009625.1", "taxid": 2066070, "species_taxid": 2066070, "relation_to_type": "type", "validated": true, "ani": 77.4112, "matched_fragments": 296, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium carbonis", "strain": "strain=B2.3", "accession": "GCA_003970795.1", "taxid": 2495581, "species_taxid": 2495581, "relation_to_type": "type", "validated": true, "ani": 77.4067, "matched_fragments": 300, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhengella mangrovi", "strain": "strain=X9-2-2", "accession": "GCA_002727065.1", "taxid": 1982044, "species_taxid": 1982044, "relation_to_type": "type", "validated": true, "ani": 77.3882, "matched_fragments": 282, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium vignae", "strain": "strain=CCBAU 05176", "accession": "GCA_000732195.1", "taxid": 690585, "species_taxid": 690585, "relation_to_type": "type", "validated": true, "ani": 77.3854, "matched_fragments": 257, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hainanense", "strain": "strain=CCBAU 57015", "accession": "GCA_900094555.1", "taxid": 52131, "species_taxid": 52131, "relation_to_type": "type", "validated": true, "ani": 77.3817, "matched_fragments": 235, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium aethiopicum", "strain": "strain=HBR26", "accession": "GCA_900094625.1", "taxid": 1138170, "species_taxid": 1138170, "relation_to_type": "type", "validated": true, "ani": 77.3551, "matched_fragments": 260, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola cellulosilytica", "strain": "strain=JCM 19534", "accession": "GCA_019966575.1", "taxid": 1429082, "species_taxid": 1429082, "relation_to_type": "type", "validated": true, "ani": 77.3298, "matched_fragments": 194, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium jaguaris", "strain": "strain=CCGE525", "accession": "GCA_003627755.1", "taxid": 1312183, "species_taxid": 1312183, "relation_to_type": "type", "validated": true, "ani": 77.2996, "matched_fragments": 236, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer alkalisoli", "strain": "strain=YIC4027", "accession": "GCA_008932245.1", "taxid": 1752398, "species_taxid": 1752398, "relation_to_type": "type", "validated": true, "ani": 77.2897, "matched_fragments": 265, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium kostiense", "strain": "strain=DSM 13372", "accession": "GCA_017874595.1", "taxid": 76747, "species_taxid": 76747, "relation_to_type": "type", "validated": true, "ani": 77.2593, "matched_fragments": 242, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium tropici", "strain": "strain=CIAT 899", "accession": "GCA_000330885.1", "taxid": 398, "species_taxid": 398, "relation_to_type": "type", "validated": true, "ani": 77.2443, "matched_fragments": 248, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 77.1298, "matched_fragments": 296, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas marina", "strain": "strain=SW136", "accession": "GCA_017183135.1", "taxid": 2780508, "species_taxid": 2780508, "relation_to_type": "type", "validated": true, "ani": 77.0616, "matched_fragments": 203, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter aminoxidans", "strain": "strain=ATCC BAA-299", "accession": "GCA_023571765.1", "taxid": 186280, "species_taxid": 186280, "relation_to_type": "type", "validated": true, "ani": 76.556, "matched_fragments": 134, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 76.544, "matched_fragments": 157, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=Ch11", "accession": "GCA_023757665.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 76.5208, "matched_fragments": 136, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 76.4097, "matched_fragments": 164, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=DSM 26438", "accession": "GCA_014196515.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 76.4081, "matched_fragments": 135, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 76.2699, "matched_fragments": 188, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017794825.1", "gtdb_species": "s__SPNT01 sp017794825", "ani": 88.7352, "matched_fragments": 1542, "total_fragments": 1892, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__SPNT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004959855.1", "gtdb_species": "s__SPNT01 sp004959855", "ani": 78.4822, "matched_fragments": 453, "total_fragments": 1892, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__SPNT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000759435.1", "gtdb_species": "s__Hoeflea sp000759435", "ani": 77.7704, "matched_fragments": 347, 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