{ "type": "genome", "identifier": "GCF_019565455.1", "organism": "Flavobacterium oreochromis", "title": "Flavobacterium oreochromis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "United States Department of Agriculture, Agricultural Research Service", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019565455.1", "bioproject": "PRJNA224116", "biosample": "SAMN17052640", "wgs_master": "na", "refseq_category": "na", "taxid": "2906078", "species_taxid": "2906078", "organism_name": "Flavobacterium oreochromis", "infraspecific_name": "strain=Costa Rica 04-02-TN", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/11", "asm_name": "ASM1956545v1", "asm_submitter": "United States Department of Agriculture, Agricultural Research Service", "gbrs_paired_asm": "GCA_019565455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/565/455/GCF_019565455.1_ASM1956545v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3540003", "genome_size_ungapped": "3540003", "gc_percent": "30.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019565455.1-RS_2024_09_14", "annotation_date": "2024-09-14", "total_gene_count": "3614", "protein_coding_gene_count": "3026", "non_coding_gene_count": "127", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-11", "dateModified": "2021-08-11", "datePublished": "2021-08-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium oreochromis" ], "sample_taxid": [ "2906078" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Costa Rica" ], "sample_host_location_id": [], "data_size": "0.953 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3540003", "Number of Sequences": "1", "Longest Sequences (bp)": "3540003", "N50 (bp)": "3540003", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.4", "Number of CDSs": "3811", "Average Protein Length": "257.4", "Coding Ratio (%)": "83.1", "Number of rRNAs": "29", "Number of tRNAs": "96", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 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1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium haoranii", "strain": "strain=DSM 22807", "accession": "GCA_900142055.1", "taxid": 683124, "species_taxid": 683124, "relation_to_type": "type", "validated": true, "ani": 77.7301, "matched_fragments": 234, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.6605, "matched_fragments": 270, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 77.4378, "matched_fragments": 136, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium filum", "strain": "strain=DSM 17961", "accession": "GCA_000425465.1", "taxid": 370974, "species_taxid": 370974, "relation_to_type": "type", "validated": true, "ani": 77.3798, "matched_fragments": 133, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.0841, "matched_fragments": 140, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 77.0661, "matched_fragments": 146, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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