{ "type": "genome", "identifier": "GCF_019565575.1", "organism": "Flavobacterium covae", "title": "Flavobacterium covae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "United States Department of Agriculture, Agricultural Research Service", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019565575.1", "bioproject": "PRJNA224116", "biosample": "SAMN17052638", "wgs_master": "na", "refseq_category": "na", "taxid": "2906076", "species_taxid": "2906076", "organism_name": "Flavobacterium covae", "infraspecific_name": "strain=AL-02-36", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/11", "asm_name": "ASM1956557v1", "asm_submitter": "United States Department of Agriculture, Agricultural Research Service", "gbrs_paired_asm": "GCA_019565575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/565/575/GCF_019565575.1_ASM1956557v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3401257", "genome_size_ungapped": "3401157", "gc_percent": "31.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019565575.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "3683", "protein_coding_gene_count": "2958", "non_coding_gene_count": "111", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-11", "dateModified": "2021-08-11", "datePublished": "2021-08-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium covae" ], "sample_taxid": [ "2906076" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Alabama" ], "sample_host_location_id": [], "data_size": "0.914 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.1, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3401157", "Number of Sequences": "1", "Longest Sequences (bp)": "3401157", "N50 (bp)": "3401157", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.0", "Number of CDSs": "4041", "Average Protein Length": "229.6", "Coding Ratio (%)": "81.8", "Number of rRNAs": "26", "Number of tRNAs": "84", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium columnare", "strain": "strain=ATCC 23463", "accession": "GCA_002530675.1", "taxid": 996, "species_taxid": 996, 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"status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.6433, "matched_fragments": 233, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium supellecticarium", "strain": "strain=CC-CTC003", "accession": "GCA_004801375.1", "taxid": 2565924, "species_taxid": 2565924, "relation_to_type": "type", "validated": true, "ani": 77.5017, "matched_fragments": 96, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium filum", "strain": "strain=DSM 17961", "accession": "GCA_000425465.1", "taxid": 370974, "species_taxid": 370974, "relation_to_type": "type", "validated": true, "ani": 77.3437, "matched_fragments": 141, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { 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