{ "type": "genome", "identifier": "GCF_019575955.1", "organism": "Nesterenkonia pannonica", "title": "Nesterenkonia pannonica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019575955.1", "bioproject": "PRJNA224116", "biosample": "SAMN20447754", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1548602", "species_taxid": "1548602", "organism_name": "Nesterenkonia pannonica", "infraspecific_name": "strain=DSM 29786", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/12", "asm_name": "ASM1957595v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_019575955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/575/955/GCF_019575955.1_ASM1957595v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2699453", "genome_size_ungapped": "2699453", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2022-08-31", "total_gene_count": "3857", "protein_coding_gene_count": "2802", "non_coding_gene_count": "57", "pubmed_id": "28905704" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-12", "dateModified": "2021-08-12", "datePublished": "2021-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia pannonica" ], "sample_taxid": [ "1548602" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary" ], "sample_host_location_id": [], "data_size": "0.744 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.97, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2699453", "Number of Sequences": "1", "Longest Sequences (bp)": "2699453", "N50 (bp)": "2699453", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "4369", "Average Protein Length": "163.3", "Coding Ratio (%)": "79.3", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia pannonica", "strain": "strain=DSM 29786", "accession": "GCA_019575955.1", "taxid": 1548602, "species_taxid": 1548602, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 899, "total_fragments": 899, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nesterenkonia populi", "strain": "strain=DSM 27959", "accession": "GCA_007994735.1", "taxid": 1591087, "species_taxid": 1591087, "relation_to_type": "type", "validated": true, "ani": 81.6998, "matched_fragments": 541, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia lacusekhoensis", "strain": "strain=DSM 12544", "accession": "GCA_017876395.1", "taxid": 150832, "species_taxid": 150832, "relation_to_type": "type", "validated": true, "ani": 78.784, "matched_fragments": 291, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia cremea", "strain": "strain=CGMCC 1.15388", "accession": "GCA_014642675.1", "taxid": 1882340, "species_taxid": 1882340, "relation_to_type": "type", "validated": true, "ani": 78.7018, "matched_fragments": 339, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sandarakina", "strain": "strain=DSM 15664", "accession": "GCA_013410215.1", "taxid": 272918, "species_taxid": 272918, "relation_to_type": "type", "validated": true, "ani": 78.5208, "matched_fragments": 284, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia lutea", "strain": "strain=DSM 15666", "accession": "GCA_014873955.1", "taxid": 272919, "species_taxid": 272919, "relation_to_type": "type", "validated": true, "ani": 78.4675, "matched_fragments": 269, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia jeotgali", "strain": "strain=DSM 19081", "accession": "GCA_014138825.1", "taxid": 317018, "species_taxid": 317018, "relation_to_type": "type", "validated": true, "ani": 78.4032, "matched_fragments": 293, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia xinjiangensis", "strain": "strain=DSM 15475", "accession": "GCA_013410745.1", "taxid": 225327, "species_taxid": 225327, "relation_to_type": "type", "validated": true, "ani": 78.3647, "matched_fragments": 296, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia aurantiaca", "strain": "strain=DSM 27373", "accession": "GCA_004364585.1", "taxid": 1436010, "species_taxid": 1436010, "relation_to_type": "type", "validated": true, "ani": 78.3624, "matched_fragments": 297, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Garicola koreensis", "strain": "strain=DSM 28238", "accession": "GCA_014195445.1", "taxid": 1262554, "species_taxid": 1262554, "relation_to_type": "type", "validated": true, "ani": 78.3065, "matched_fragments": 217, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=CGMCC 1.12781", "accession": "GCA_014639295.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 78.1633, "matched_fragments": 254, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=F10", "accession": "GCA_009758175.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 78.1469, "matched_fragments": 247, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sedimenti", "strain": "strain=MY13", "accession": "GCA_012641515.1", "taxid": 1463632, "species_taxid": 1463632, "relation_to_type": "type", "validated": true, "ani": 78.0049, "matched_fragments": 226, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia muleiensis", "strain": "strain=RB2", "accession": "GCA_003600155.1", "taxid": 2282648, "species_taxid": 2282648, "relation_to_type": "type", "validated": true, "ani": 77.8251, "matched_fragments": 264, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus flavus", "strain": "strain=DSM 19079", "accession": "GCA_022348285.1", "taxid": 384602, "species_taxid": 384602, "relation_to_type": "type", "validated": true, "ani": 77.5209, "matched_fragments": 159, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.1666, "matched_fragments": 103, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.0976, "matched_fragments": 102, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium commune", "strain": "strain=Re1", "accession": "GCA_014836945.1", "taxid": 2762219, "species_taxid": 2762219, "relation_to_type": "type", "validated": true, "ani": 76.8161, "matched_fragments": 82, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.97, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007922635.1", "gtdb_species": "s__Nesterenkonia sp007922635", "ani": 97.667, "matched_fragments": 821, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007994735.1", "gtdb_species": "s__Nesterenkonia populi", "ani": 81.7031, "matched_fragments": 541, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014642675.1", "gtdb_species": "s__Nesterenkonia cremea", "ani": 78.733, "matched_fragments": 336, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876395.1", "gtdb_species": "s__Nesterenkonia lacusekhoensis", "ani": 78.7043, "matched_fragments": 296, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013410215.1", "gtdb_species": "s__Nesterenkonia sandarakina", "ani": 78.5581, "matched_fragments": 285, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017347085.1", "gtdb_species": "s__Nesterenkonia sp017347085", "ani": 78.4184, "matched_fragments": 294, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004364585.1", "gtdb_species": "s__Nesterenkonia aurantiaca", "ani": 78.3757, "matched_fragments": 296, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014195445.1", "gtdb_species": "s__Nesterenkonia koreensis", "ani": 78.3416, "matched_fragments": 217, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013410745.1", "gtdb_species": "s__Nesterenkonia xinjiangensis", "ani": 78.3255, "matched_fragments": 294, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009758175.1", "gtdb_species": "s__Nesterenkonia alkaliphila", "ani": 78.1469, "matched_fragments": 247, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012641515.1", "gtdb_species": "s__Nesterenkonia sp012641515", "ani": 78.0367, "matched_fragments": 224, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003600155.1", "gtdb_species": "s__Nesterenkonia muleiensis", "ani": 77.8251, "matched_fragments": 264, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019114115.1", "gtdb_species": "s__Nesterenkonia stercoripullorum", "ani": 77.1982, "matched_fragments": 149, "total_fragments": 899, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.221, "cell_length": 0.038, "doubling_h": null, "growth_tmp": 29.333, "optimum_tmp": 33.785, "optimum_ph": 8.642, "genome_size": 2845759.25, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.222, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.555, "coccus_cell_shape": 0.444, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Nesterenkonia", "pannonica" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }