{ "type": "genome", "identifier": "GCF_019613795.1", "organism": "Flavobacterium litorale", "title": "Flavobacterium litorale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience & Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019613795.1", "bioproject": "PRJNA224116", "biosample": "SAMN20371526", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2856519", "species_taxid": "2856519", "organism_name": "Flavobacterium litorale", "infraspecific_name": "strain=WSW3-B6", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/16", "asm_name": "ASM1961379v1", "asm_submitter": "Korea Research Institute of Bioscience & Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_019613795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/613/795/GCF_019613795.1_ASM1961379v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2725095", "genome_size_ungapped": "2725095", "gc_percent": "37.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019613795.1-RS_2024_09_12", "annotation_date": "2024-09-12", "total_gene_count": "2491", "protein_coding_gene_count": "2430", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-16", "dateModified": "2021-08-16", "datePublished": "2021-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium litorale" ], "sample_taxid": [ "2856519" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.764 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2725095", "Number of Sequences": "1", "Longest Sequences (bp)": "2725095", "N50 (bp)": "2725095", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.1", "Number of CDSs": "2441", "Average Protein Length": "336.3", "Coding Ratio (%)": "90.4", "Number of rRNAs": "9", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.6158, "matched_fragments": 72, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003344925.1", "gtdb_species": "s__Flavobacterium arcticum", "ani": 80.1854, "matched_fragments": 569, "total_fragments": 908, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004634195.1", 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