{ "type": "genome", "identifier": "GCF_019633745.1", "organism": "Methanofollis formosanus", "title": "Methanofollis formosanus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Chung Hsing University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019633745.1", "bioproject": "PRJNA224116", "biosample": "SAMN11125589", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "299308", "species_taxid": "299308", "organism_name": "Methanofollis formosanus", "infraspecific_name": "strain=ML15", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/16", "asm_name": "ASM1963374v1", "asm_submitter": "National Chung Hsing University", "gbrs_paired_asm": "GCA_019633745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/633/745/GCF_019633745.1_ASM1963374v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "2965921", "genome_size_ungapped": "2965828", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019633745.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "2686", "protein_coding_gene_count": "2613", "non_coding_gene_count": "57", "pubmed_id": "15774671" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-16", "dateModified": "2021-08-16", "datePublished": "2021-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanofollis formosanus" ], "sample_taxid": [ "299308" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Wang-gong, Changhua County" ], "sample_host_location_id": [], "data_size": "0.820 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2965921", "Number of Sequences": "1", "Longest Sequences (bp)": "2965921", "N50 (bp)": "2965921", "Gap Ratio (%)": "0.003136", "GCcontent (%)": "60.3", "Number of CDSs": "2603", "Average Protein Length": "307.8", "Coding Ratio (%)": "81.0", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanofollis formosanus", "strain": "strain=ML15", "accession": "GCA_019633745.1", "taxid": 299308, "species_taxid": 299308, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 988, "total_fragments": 988, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methanofollis ethanolicus", "strain": "strain=HASU", "accession": "GCA_001571385.1", "taxid": 488124, "species_taxid": 488124, "relation_to_type": "type", "validated": true, "ani": 80.9425, "matched_fragments": 511, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanofollis tationis", "strain": "strain=DSM 2702", "accession": "GCA_013377755.1", "taxid": 81417, "species_taxid": 81417, "relation_to_type": "type", "validated": true, "ani": 80.0463, "matched_fragments": 392, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanofollis liminatans", "strain": "strain=DSM 4140", "accession": "GCA_000275865.1", "taxid": 2201, "species_taxid": 2201, "relation_to_type": "type", "validated": true, "ani": 79.895, "matched_fragments": 435, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus marisnigri", "strain": "strain=JR1", "accession": "GCA_000015825.1", "taxid": 2198, "species_taxid": 2198, "relation_to_type": "type", "validated": true, "ani": 77.4764, "matched_fragments": 177, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus horonobensis", "strain": "strain=T10", "accession": "GCA_001602375.1", "taxid": 528314, "species_taxid": 528314, "relation_to_type": "type", "validated": true, "ani": 77.4303, "matched_fragments": 178, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus sediminis", "strain": "strain=S3Fa", "accession": "GCA_001017125.1", "taxid": 1550566, "species_taxid": 1550566, "relation_to_type": "type", "validated": true, "ani": 77.3995, "matched_fragments": 180, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017875325.1", "gtdb_species": "s__Methanofollis sp017875325", "ani": 86.1416, "matched_fragments": 697, "total_fragments": 988, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanofollaceae;g__Methanofollis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001571385.1", "gtdb_species": "s__Methanofollis ethanolicus", "ani": 80.9211, "matched_fragments": 512, "total_fragments": 988, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanofollaceae;g__Methanofollis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002498315.1", "gtdb_species": "s__Methanofollis sp002498315", "ani": 80.8344, "matched_fragments": 491, "total_fragments": 988, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanofollaceae;g__Methanofollis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013377755.1", "gtdb_species": "s__Methanofollis tationis", "ani": 80.0325, "matched_fragments": 393, "total_fragments": 988, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanofollaceae;g__Methanofollis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000275865.1", "gtdb_species": "s__Methanofollis liminatans", "ani": 79.871, "matched_fragments": 437, "total_fragments": 988, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanofollaceae;g__Methanofollis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001602375.1", "gtdb_species": "s__Methanoculleus horonobensis", "ani": 77.4496, "matched_fragments": 176, "total_fragments": 988, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001017125.1", "gtdb_species": "s__Methanoculleus sediminis", "ani": 77.416, "matched_fragments": 179, "total_fragments": 988, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.176, "cell_length": 0.176, "doubling_h": 1.301, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 6.6, "genome_size": 2594506.5, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Methanofollis", "formosanus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }