{ "type": "genome", "identifier": "GCF_019645835.1", "organism": "Mycolicibacterium holsaticum DSM 44478 = JCM 12374", "title": "Mycolicibacterium holsaticum DSM 44478 = JCM 12374", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Institute of Tuberculosis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019645835.1", "bioproject": "PRJNA224116", "biosample": "SAMN20254262", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1226752", "species_taxid": "152142", "organism_name": "Mycolicibacterium holsaticum DSM 44478 = JCM 12374", "infraspecific_name": "strain=JCM 12374", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/17", "asm_name": "ASM1964583v1", "asm_submitter": "Research Institute of Tuberculosis", "gbrs_paired_asm": "GCA_019645835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/645/835/GCF_019645835.1_ASM1964583v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5623714", "genome_size_ungapped": "5623714", "gc_percent": "67.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019645835.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "5376", "protein_coding_gene_count": "5254", "non_coding_gene_count": "56", "pubmed_id": "36651784" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-17", "dateModified": "2021-08-17", "datePublished": "2021-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium holsaticum DSM 44478 = JCM 12374" ], "sample_taxid": [ "1226752" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.535 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5623714", "Number of Sequences": "1", "Longest Sequences (bp)": "5623714", "N50 (bp)": "5623714", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "5354", "Average Protein Length": "326.5", "Coding Ratio (%)": "93.2", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium elephantis", "strain": "strain=DSM 44368", "accession": "GCA_004014805.1", "taxid": 81858, "species_taxid": 81858, "relation_to_type": "type", "validated": true, "ani": 87.1648, "matched_fragments": 1428, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium pulveris", "strain": "strain=JCM 6370", "accession": "GCA_010725725.1", "taxid": 36813, "species_taxid": 36813, "relation_to_type": "type", "validated": true, "ani": 87.017, "matched_fragments": 1440, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 82.7175, "matched_fragments": 1177, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_009192875.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 82.6221, "matched_fragments": 1123, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 82.6049, "matched_fragments": 1142, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 82.5885, "matched_fragments": 1127, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium malmesburyense", "strain": "strain=WCM 7299", "accession": "GCA_001050015.1", "taxid": 1566886, "species_taxid": 1566886, "relation_to_type": "type", "validated": true, "ani": 82.3212, "matched_fragments": 1182, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium komanii", "strain": "strain=GPK 1020", "accession": "GCA_001050035.1", "taxid": 1566885, "species_taxid": 1566885, "relation_to_type": "type", "validated": true, "ani": 82.0877, "matched_fragments": 1181, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium neumannii", "strain": "strain=CECT 8766", "accession": "GCA_002245615.1", "taxid": 2048551, "species_taxid": 2048551, "relation_to_type": "type", "validated": true, "ani": 82.0776, "matched_fragments": 1173, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium hassiacum", "strain": "strain=DSM 44199", "accession": "GCA_000379865.1", "taxid": 46351, "species_taxid": 46351, "relation_to_type": "type", "validated": true, "ani": 81.4272, "matched_fragments": 1065, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium hassiacum", "strain": "strain=DSM 44199", "accession": "GCA_000300375.1", "taxid": 46351, "species_taxid": 46351, "relation_to_type": "type", "validated": true, "ani": 81.3574, "matched_fragments": 1035, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=DSM 44219", "accession": "GCA_002086595.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 80.8675, "matched_fragments": 980, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_016313185.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 80.6819, "matched_fragments": 959, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 80.6338, "matched_fragments": 958, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.1359, "matched_fragments": 929, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.0853, "matched_fragments": 958, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=DSM 45166", "accession": "GCA_002101735.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 80.0193, "matched_fragments": 798, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=KUM060204T", "accession": "GCA_000759695.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 79.9975, "matched_fragments": 774, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium aquaticum", "strain": "strain=RW6", "accession": "GCA_002086485.1", "taxid": 1927124, "species_taxid": 1927124, "relation_to_type": "type", "validated": true, "ani": 79.9574, "matched_fragments": 893, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=DSM 44243", "accession": "GCA_002101595.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 79.9052, "matched_fragments": 777, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.8849, "matched_fragments": 847, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=ATCC 51131", "accession": "GCA_000974705.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 79.8836, "matched_fragments": 625, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": 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