{ "type": "genome", "identifier": "GCF_019645855.1", "organism": "Mycobacterium malmoense", "title": "Mycobacterium malmoense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Institute of Tuberculosis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019645855.1", "bioproject": "PRJNA224116", "biosample": "SAMN20254263", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1780", "species_taxid": "1780", "organism_name": "Mycobacterium malmoense", "infraspecific_name": "strain=ATCC 29571", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/17", "asm_name": "ASM1964585v1", "asm_submitter": "Research Institute of Tuberculosis", "gbrs_paired_asm": "GCA_019645855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/645/855/GCF_019645855.1_ASM1964585v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5319859", "genome_size_ungapped": "5319859", "gc_percent": "67.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019645855.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "4975", "protein_coding_gene_count": "4781", "non_coding_gene_count": "52", "pubmed_id": "36651784" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-17", "dateModified": "2021-08-17", "datePublished": "2021-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium malmoense" ], "sample_taxid": [ "1780" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_023278525.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 83.8556, "matched_fragments": 1191, "total_fragments": 1773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare subsp. yongonense", "strain": "strain=05-1390", "accession": "GCA_000418535.2", "taxid": 1203599, "species_taxid": 1767, "relation_to_type": "type", "validated": true, "ani": 83.8213, "matched_fragments": 1188, "total_fragments": 1773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 83.7757, "matched_fragments": 1217, "total_fragments": 1773, "ani_threshold": 95, "status": 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