{ "type": "genome", "identifier": "GCF_019645875.1", "organism": "Mycolicibacterium senegalense", "title": "Mycolicibacterium senegalense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Institute of Tuberculosis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019645875.1", "bioproject": "PRJNA224116", "biosample": "SAMN20254268", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1796", "species_taxid": "1796", "organism_name": "Mycolicibacterium senegalense", "infraspecific_name": "strain=ATCC 35796", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/17", "asm_name": "ASM1964587v1", "asm_submitter": "Research Institute of Tuberculosis", "gbrs_paired_asm": "GCA_019645875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/645/875/GCF_019645875.1_ASM1964587v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6086722", "genome_size_ungapped": "6086722", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019645875.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "5816", "protein_coding_gene_count": "5702", "non_coding_gene_count": "58", "pubmed_id": "36651784" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-17", "dateModified": "2021-08-17", "datePublished": "2021-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium senegalense" ], "sample_taxid": [ "1796" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.671 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6086722", "Number of Sequences": "1", "Longest Sequences (bp)": "6086722", "N50 (bp)": "6086722", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "5806", "Average Protein Length": "325.7", "Coding Ratio (%)": "93.2", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium conceptionense", "strain": "strain=CCUG 50187", "accession": "GCA_002102065.1", "taxid": 451644, "species_taxid": 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