{
    "type": "genome",
    "identifier": "GCF_019655855.2",
    "organism": "Pseudomonas paralcaligenes",
    "title": "Pseudomonas paralcaligenes",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Microbiology, Juntendo University School of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019655855.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00248604",
        "wgs_master": "BPFX00000000.2",
        "refseq_category": "reference genome",
        "taxid": "2772558",
        "species_taxid": "2772558",
        "organism_name": "Pseudomonas paralcaligenes",
        "infraspecific_name": "strain=MRCP1333",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/22",
        "asm_name": "ASM1965585v2",
        "asm_submitter": "Department of Microbiology, Juntendo University School of Medicine",
        "gbrs_paired_asm": "GCA_019655855.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/655/855/GCF_019655855.2_ASM1965585v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5408033",
        "genome_size_ungapped": "5408033",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "50",
        "contig_count": "50",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019655855.2-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "5064",
        "protein_coding_gene_count": "4917",
        "non_coding_gene_count": "60",
        "pubmed_id": "36748583"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-22",
    "dateModified": "2022-06-22",
    "datePublished": "2022-06-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas paralcaligenes"
        ],
        "sample_taxid": [
            "2772558"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Tokyo, Musashino-city"
        ],
        "sample_host_location_id": [],
        "data_size": "1.474 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5408033",
        "Number of Sequences": "50",
        "Longest Sequences (bp)": "833369",
        "N50 (bp)": "615807",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "4964",
        "Average Protein Length": "323.5",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas alcaligenes",
                "strain": "strain=NCTC10367",
                "accession": "GCA_900455475.1",
                "taxid": 43263,
                "species_taxid": 43263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2652,
                "matched_fragments": 1114,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas alcaligenes",
                "strain": "strain=NBRC 14159",
                "accession": "GCA_000467105.1",
                "taxid": 43263,
                "species_taxid": 43263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2182,
                "matched_fragments": 1108,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4874,
                "matched_fragments": 912,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas tohonis",
                "strain": "strain=TUM18999",
                "accession": "GCA_012767755.2",
                "taxid": 2725477,
                "species_taxid": 2725477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4754,
                "matched_fragments": 1126,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas hydrolytica",
                "strain": "strain=DSWY01",
                "accession": "GCA_021495345.2",
                "taxid": 2493633,
                "species_taxid": 2493633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3342,
                "matched_fragments": 1012,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas delhiensis",
                "strain": "strain=RLD-1",
                "accession": "GCA_900187975.1",
                "taxid": 366289,
                "species_taxid": 366289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1321,
                "matched_fragments": 1083,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas citronellolis",
                "strain": "strain=NBRC 103043",
                "accession": "GCA_002091555.1",
                "taxid": 53408,
                "species_taxid": 53408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1073,
                "matched_fragments": 1073,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas delhiensis",
                "strain": "strain=CCM 7361",
                "accession": "GCA_900099945.1",
                "taxid": 366289,
                "species_taxid": 366289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1062,
                "matched_fragments": 1074,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas guguanensis",
                "strain": "strain=JCM 18416",
                "accession": "GCA_900104265.1",
                "taxid": 1198456,
                "species_taxid": 1198456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8426,
                "matched_fragments": 1024,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
                "strain": "strain=UL073",
                "accession": "GCA_016901015.1",
                "taxid": 2809017,
                "species_taxid": 2809017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.677,
                "matched_fragments": 983,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6528,
                "matched_fragments": 936,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas oryzae",
                "strain": "strain=KCTC 32247",
                "accession": "GCA_900104805.1",
                "taxid": 1392877,
                "species_taxid": 1392877,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3666,
                "matched_fragments": 807,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas alcaliphila",
                "strain": "strain=NBRC 102411",
                "accession": "GCA_002091495.1",
                "taxid": 101564,
                "species_taxid": 101564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2563,
                "matched_fragments": 938,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas alcaliphila",
                "strain": "strain=JCM 10630",
                "accession": "GCA_900101755.1",
                "taxid": 101564,
                "species_taxid": 101564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1793,
                "matched_fragments": 950,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sihuiensis",
                "strain": "strain=KCTC 32246",
                "accession": "GCA_900106015.1",
                "taxid": 1274359,
                "species_taxid": 1274359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1278,
                "matched_fragments": 971,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas composti",
                "strain": "strain=CCUG 59231",
                "accession": "GCA_900115475.1",
                "taxid": 658457,
                "species_taxid": 658457,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8758,
                "matched_fragments": 980,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas azotifigens",
                "strain": "strain=DSM 17556",
                "accession": "GCA_000425625.1",
                "taxid": 291995,
                "species_taxid": 291995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6688,
                "matched_fragments": 834,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=JCM 5962",
                "accession": "GCA_022496575.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6653,
                "matched_fragments": 991,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=CCUG 551",
                "accession": "GCA_008801675.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6415,
                "matched_fragments": 996,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas indica",
                "strain": "strain=JCM 21544",
                "accession": "GCA_900100285.1",
                "taxid": 137658,
                "species_taxid": 137658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6166,
                "matched_fragments": 974,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas indica",
                "strain": "strain=NBRC 103045",
                "accession": "GCA_002091635.1",
                "taxid": 137658,
                "species_taxid": 137658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6159,
                "matched_fragments": 973,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azotobacter chroococcum subsp. isscasi",
                "strain": "strain=P205",
                "accession": "GCA_004327895.1",
                "taxid": 2528971,
                "species_taxid": 353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5058,
                "matched_fragments": 763,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4915,
                "matched_fragments": 1016,
                "total_fragments": 1781,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002483005.1",
                "gtdb_species": "s__Pseudomonas_E sp002483005",
                "ani": 95.7766,
                "matched_fragments": 783,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005508865.1",
                "gtdb_species": "s__Pseudomonas_E sp005508865",
                "ani": 89.1534,
                "matched_fragments": 1154,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003205495.1",
                "gtdb_species": "s__Pseudomonas_E alcaligenes_B",
                "ani": 88.8433,
                "matched_fragments": 1012,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014851565.1",
                "gtdb_species": "s__Pseudomonas_E sp014851565",
                "ani": 88.7646,
                "matched_fragments": 1136,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000761545.1",
                "gtdb_species": "s__Pseudomonas_E sp000761545",
                "ani": 88.4745,
                "matched_fragments": 1128,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000467105.1",
                "gtdb_species": "s__Pseudomonas_E alcaligenes",
                "ani": 88.2633,
                "matched_fragments": 1105,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "96.43",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_900156545.1",
                "gtdb_species": "s__Pseudomonas_E alcaligenes_A",
                "ani": 87.7409,
                "matched_fragments": 1050,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.95",
                "min_intra_species_ani": "95.95",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014851865.1",
                "gtdb_species": "s__Pseudomonas_E sp014851865",
                "ani": 87.7212,
                "matched_fragments": 1296,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014490745.1",
                "gtdb_species": "s__Pseudomonas_E alcaligenes_C",
                "ani": 86.8929,
                "matched_fragments": 1098,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003696305.1",
                "gtdb_species": "s__Pseudomonas_E sp003696305",
                "ani": 85.2242,
                "matched_fragments": 980,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012767755.2",
                "gtdb_species": "s__Pseudomonas_F sp003234055",
                "ani": 84.5152,
                "matched_fragments": 1121,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.89",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000474255.1",
                "gtdb_species": "s__Pseudomonas_F alcaligenes_A",
                "ani": 84.2099,
                "matched_fragments": 1103,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013393345.1",
                "gtdb_species": "s__Pseudomonas_F resinovorans_C",
                "ani": 82.5639,
                "matched_fragments": 982,
                "total_fragments": 1781,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.04",
                "min_intra_species_ani": "95.04",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": 0.186,
        "doubling_h": -0.025,
        "growth_tmp": 28.767,
        "optimum_tmp": 27.972,
        "optimum_ph": 7.258,
        "genome_size": 5663774.24,
        "gc_content": 60.938,
        "coding_genes": 5204.79,
        "rRNA16S_genes": 5.319,
        "tRNA_genes": 67.35,
        "gram_stain": 0.0,
        "sporulation": 0.013,
        "motility": 0.975,
        "range_salinity": 0.666,
        "facultative_respiration": 0.021,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.978,
        "mesophilic_range_tmp": 0.926,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.073,
        "bacillus_cell_shape": 0.988,
        "coccus_cell_shape": 0.011,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudomonas",
        "paralcaligenes"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}