{
    "type": "genome",
    "identifier": "GCF_019656215.1",
    "organism": "Apilactobacillus zhangqiuensis",
    "title": "Apilactobacillus zhangqiuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeast Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019656215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00326014",
        "wgs_master": "BPLK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2841031",
        "species_taxid": "2841031",
        "organism_name": "Apilactobacillus zhangqiuensis",
        "infraspecific_name": "strain=F502-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/06/16",
        "asm_name": "ASM1965621v1",
        "asm_submitter": "Northeast Agricultural University",
        "gbrs_paired_asm": "GCA_019656215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/656/215/GCF_019656215.1_ASM1965621v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1445942",
        "genome_size_ungapped": "1445942",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019656215.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "1365",
        "protein_coding_gene_count": "1301",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-06-16",
    "dateModified": "2021-06-16",
    "datePublished": "2021-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Apilactobacillus zhangqiuensis"
        ],
        "sample_taxid": [
            "2841031"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.406 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1445942",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "361210",
        "N50 (bp)": "268821",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "1314",
        "Average Protein Length": "330.0",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Apilactobacillus zhangqiuensis",
                "strain": "strain=F502-1",
                "accession": "GCA_019656215.1",
                "taxid": 2841031,
                "species_taxid": 2841031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 479,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Apilactobacillus waqarii",
                "strain": "strain=HBW1",
                "accession": "GCA_019061205.1",
                "taxid": 2851006,
                "species_taxid": 2851006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2695,
                "matched_fragments": 439,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus nanyangensis",
                "strain": "strain=HN36-1",
                "accession": "GCA_016861915.1",
                "taxid": 2799579,
                "species_taxid": 2799579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0447,
                "matched_fragments": 402,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus kunkeei",
                "strain": "strain=YH-15",
                "accession": "GCA_001281265.1",
                "taxid": 148814,
                "species_taxid": 148814,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.269,
                "matched_fragments": 450,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus kunkeei",
                "strain": "strain=DSM 12361",
                "accession": "GCA_001433825.1",
                "taxid": 148814,
                "species_taxid": 148814,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.2022,
                "matched_fragments": 454,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001308205.1",
                "gtdb_species": "s__Apilactobacillus kunkeei_B",
                "ani": 96.6917,
                "matched_fragments": 445,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001949975.2",
                "gtdb_species": "s__Apilactobacillus kunkeei_A",
                "ani": 92.1887,
                "matched_fragments": 441,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.15",
                "min_intra_species_ani": "95.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_001308195.1",
                "gtdb_species": "s__Apilactobacillus kunkeei_C",
                "ani": 91.8933,
                "matched_fragments": 430,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.16",
                "min_intra_species_ani": "95.16",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005930915.1",
                "gtdb_species": "s__Apilactobacillus kunkeei_D",
                "ani": 91.8037,
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                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.78",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001281265.1",
                "gtdb_species": "s__Apilactobacillus kunkeei",
                "ani": 91.269,
                "matched_fragments": 450,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_005930975.1",
                "gtdb_species": "s__Apilactobacillus kunkeei_E",
                "ani": 90.1677,
                "matched_fragments": 411,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Apilactobacillus",
        "zhangqiuensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}