{ "tc_result": [ { "organism_name": "Methylomagnum ishizawai", "strain": "strain=RS11D-Pr", "accession": "GCA_019670005.1", "taxid": 1760988, "species_taxid": 1760988, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1729, "total_fragments": 1729, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylococcus geothermalis", "strain": "strain=IM1", "accession": "GCA_012769535.1", "taxid": 2681310, "species_taxid": 2681310, "relation_to_type": "type", "validated": true, "ani": 77.9173, "matched_fragments": 308, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloterricola oryzae", "strain": "strain=73a", "accession": "GCA_000934725.1", "taxid": 1495050, "species_taxid": 1495050, "relation_to_type": "type", "validated": true, "ani": 77.7316, "matched_fragments": 310, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylogaea oryzae", "strain": "strain=JCM 16910", "accession": "GCA_001312345.1", "taxid": 1295382, "species_taxid": 1295382, "relation_to_type": "type", "validated": true, "ani": 77.4418, "matched_fragments": 218, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylogaea oryzae", "strain": "strain=E10", "accession": "GCA_019669985.1", "taxid": 1295382, "species_taxid": 1295382, "relation_to_type": "type", "validated": true, "ani": 77.4413, "matched_fragments": 325, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylococcus capsulatus", "strain": "strain=ATCC 19069", "accession": "GCA_000424685.1", "taxid": 414, "species_taxid": 414, "relation_to_type": "type", "validated": true, "ani": 77.3761, "matched_fragments": 266, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylococcus capsulatus", "strain": "strain=Texas", "accession": "GCA_000297615.1", "taxid": 414, "species_taxid": 414, "relation_to_type": "type", "validated": true, "ani": 77.1676, "matched_fragments": 263, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.8145, "matched_fragments": 157, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylotetracoccus oryzae", "strain": "strain=C50C1", "accession": "GCA_006175985.1", "taxid": 1919059, "species_taxid": 1919059, "relation_to_type": "type", "validated": true, "ani": 76.638, "matched_fragments": 182, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 76.4726, "matched_fragments": 150, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax pacificus", "strain": "strain=W11-5", "accession": "GCA_000299335.2", "taxid": 1306787, "species_taxid": 1306787, "relation_to_type": "type", "validated": true, "ani": 76.365, "matched_fragments": 84, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidihalobacter ferrooxydans", "strain": "strain=V8", "accession": "GCA_001975725.1", "taxid": 1765967, "species_taxid": 1765967, "relation_to_type": "type", "validated": true, "ani": 76.2539, "matched_fragments": 85, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomicrobium lacus", "strain": "strain=LW14", "accession": "GCA_000527095.1", "taxid": 136992, "species_taxid": 136992, "relation_to_type": "type", "validated": true, "ani": 76.1874, "matched_fragments": 114, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas terrae", "strain": "strain=R29", "accession": "GCA_006265115.1", "taxid": 2546226, "species_taxid": 2546226, "relation_to_type": "type", "validated": true, "ani": 76.1549, "matched_fragments": 128, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 76.1255, "matched_fragments": 147, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 76.1143, "matched_fragments": 156, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 76.0908, "matched_fragments": 83, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans acidivorans", "strain": "strain=DSM 23606", "accession": "GCA_003182095.1", "taxid": 886464, "species_taxid": 886464, "relation_to_type": "type", "validated": true, "ani": 75.9371, "matched_fragments": 117, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 75.916, "matched_fragments": 119, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 75.8315, "matched_fragments": 120, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 75.7078, "matched_fragments": 143, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.23, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900155475.1", "gtdb_species": "s__Methylomagnum ishizawai", "ani": 93.5482, "matched_fragments": 1415, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylomagnum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902810705.1", "gtdb_species": "s__CADDYU01 sp902810705", "ani": 78.0248, "matched_fragments": 371, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__CADDYU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012769535.1", "gtdb_species": "s__Methylococcus sp012769535", "ani": 77.9597, "matched_fragments": 307, "total_fragments": 1729, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methyloterricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012026715.1", "gtdb_species": "s__VEPB01 sp012026715", "ani": 77.5327, "matched_fragments": 260, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__VEPB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001312345.1", "gtdb_species": "s__Methylogaea oryzae", "ani": 77.4418, "matched_fragments": 218, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylogaea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000424685.1", "gtdb_species": "s__Methylococcus capsulatus", "ani": 77.3124, "matched_fragments": 263, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002005105.1", "gtdb_species": "s__Methylocaldum sp002005105", "ani": 77.1003, "matched_fragments": 255, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylocaldum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000939975.1", "gtdb_species": "s__Pseudomonas_D saudimassiliensis", "ani": 76.813, "matched_fragments": 79, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000299335.2", "gtdb_species": "s__Alcanivorax_A pacificus", "ani": 76.566, "matched_fragments": 84, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002391525.1", "gtdb_species": "s__Competibacter_A sp002391525", "ani": 76.3991, "matched_fragments": 157, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Competibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_008933795.1", "gtdb_species": "s__Contendobacter sp008933795", "ani": 76.3723, "matched_fragments": 170, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Contendobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109175.1", "gtdb_species": "s__Pseudomonas_K linyingensis", "ani": 76.1139, "matched_fragments": 148, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015711015.1", "gtdb_species": "s__Methylomonas sp015711015", "ani": 76.016, "matched_fragments": 114, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018240295.1", "gtdb_species": "s__Plasticicumulans sp003962905", "ani": 75.8875, "matched_fragments": 123, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Plasticicumulans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.50", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011752565.1", "gtdb_species": "s__Pseudomonas_E sp011752565", "ani": 75.5636, "matched_fragments": 126, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.50", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" } ] }