{
    "type": "genome",
    "identifier": "GCF_019684215.1",
    "organism": "Rhizobium bangladeshense",
    "title": "Rhizobium bangladeshense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF CALIFORNIA DAVIS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019684215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14686358",
        "wgs_master": "JABDXG000000000.1",
        "refseq_category": "na",
        "taxid": "1138189",
        "species_taxid": "1138189",
        "organism_name": "Rhizobium bangladeshense",
        "infraspecific_name": "strain=BLR175",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/18",
        "asm_name": "ASM1968421v1",
        "asm_submitter": "UNIVERSITY OF CALIFORNIA DAVIS",
        "gbrs_paired_asm": "GCA_019684215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/684/215/GCF_019684215.1_ASM1968421v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6348611",
        "genome_size_ungapped": "6348611",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019684215.1-RS_2024_09_22",
        "annotation_date": "2024-09-22",
        "total_gene_count": "6117",
        "protein_coding_gene_count": "5864",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-18",
    "dateModified": "2021-08-18",
    "datePublished": "2021-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium bangladeshense"
        ],
        "sample_taxid": [
            "1138189"
        ],
        "sample_host_organism": [
            "Lens culinaris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Bangladesh"
        ],
        "sample_host_location_id": [],
        "data_size": "1.771 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6348611",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "4365990",
        "N50 (bp)": "4365990",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.9",
        "Number of CDSs": "6022",
        "Average Protein Length": "305.3",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhizobium bangladeshense",
                "strain": "strain=BLR175",
                "accession": "GCA_019684215.1",
                "taxid": 1138189,
                "species_taxid": 1138189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2110,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhizobium bangladeshense",
                "strain": "strain=BLR175",
                "accession": "GCA_017357245.1",
                "taxid": 1138189,
                "species_taxid": 1138189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9998,
                "matched_fragments": 2109,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhizobium aethiopicum",
                "strain": "strain=HBR26",
                "accession": "GCA_900094625.1",
                "taxid": 1138170,
                "species_taxid": 1138170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9074,
                "matched_fragments": 1724,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium esperanzae",
                "strain": "strain=CNPSo 668",
                "accession": "GCA_002204185.1",
                "taxid": 1967781,
                "species_taxid": 1967781,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.8324,
                "matched_fragments": 1668,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium lentis",
                "strain": "strain=BLR27",
                "accession": "GCA_017352135.1",
                "taxid": 1138194,
                "species_taxid": 1138194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6033,
                "matched_fragments": 1762,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium lentis",
                "strain": "strain=BLR27",
                "accession": "GCA_019684715.1",
                "taxid": 1138194,
                "species_taxid": 1138194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5933,
                "matched_fragments": 1763,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium etli",
                "strain": "strain=CFN 42",
                "accession": "GCA_000092045.1",
                "taxid": 29449,
                "species_taxid": 29449,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.373,
                "matched_fragments": 1718,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium croatiense",
                "strain": "strain=13T",
                "accession": "GCA_019793465.1",
                "taxid": 2867516,
                "species_taxid": 2867516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2057,
                "matched_fragments": 1611,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium anhuiense",
                "strain": "strain=CCBAU 23252",
                "accession": "GCA_003985145.1",
                "taxid": 1184720,
                "species_taxid": 1184720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3662,
                "matched_fragments": 1642,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium anhuiense",
                "strain": "strain=CGMCC 1.12621",
                "accession": "GCA_014638185.1",
                "taxid": 1184720,
                "species_taxid": 1184720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3156,
                "matched_fragments": 1644,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium ecuadorense",
                "strain": "strain=CNPSO 671",
                "accession": "GCA_001187535.1",
                "taxid": 1671795,
                "species_taxid": 1671795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.208,
                "matched_fragments": 1510,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium redzepovicii",
                "strain": "strain=18T",
                "accession": "GCA_019793435.1",
                "taxid": 2867518,
                "species_taxid": 2867518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9351,
                "matched_fragments": 1590,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium mongolense subsp. loessense",
                "strain": "strain=CGMCC 1.3401",
                "accession": "GCA_900099775.1",
                "taxid": 158890,
                "species_taxid": 57676,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2004,
                "matched_fragments": 1101,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium dioscoreae",
                "strain": "strain=S-93",
                "accession": "GCA_009176305.1",
                "taxid": 2653122,
                "species_taxid": 2653122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0837,
                "matched_fragments": 917,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
                "strain": "strain=F8825",
                "accession": "GCA_004137355.1",
                "taxid": 2509717,
                "species_taxid": 2509717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3109,
                "matched_fragments": 642,
                "total_fragments": 2113,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017357245.1",
                "gtdb_species": "s__Rhizobium bangladeshense",
                "ani": 99.9998,
                "matched_fragments": 2110,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014197535.1",
                "gtdb_species": "s__Rhizobium aethiopicum_A",
                "ani": 90.4216,
                "matched_fragments": 1684,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017948245.1",
                "gtdb_species": "s__Rhizobium sp017948245",
                "ani": 90.3097,
                "matched_fragments": 1766,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002117485.1",
                "gtdb_species": "s__Rhizobium sp002117485",
                "ani": 89.8705,
                "matched_fragments": 1717,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002204185.1",
                "gtdb_species": "s__Rhizobium esperanzae",
                "ani": 89.8252,
                "matched_fragments": 1668,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.10",
                "min_intra_species_ani": "96.05",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_017352135.1",
                "gtdb_species": "s__Rhizobium lentis",
                "ani": 89.6015,
                "matched_fragments": 1764,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000092045.1",
                "gtdb_species": "s__Rhizobium etli",
                "ani": 89.3668,
                "matched_fragments": 1719,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.53",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002531955.1",
                "gtdb_species": "s__Rhizobium sp002531955",
                "ani": 88.2173,
                "matched_fragments": 1607,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002531825.1",
                "gtdb_species": "s__Rhizobium sp002531825",
                "ani": 87.7671,
                "matched_fragments": 1545,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002211305.1",
                "gtdb_species": "s__Rhizobium sp002211305",
                "ani": 87.5298,
                "matched_fragments": 1572,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.97",
                "min_intra_species_ani": "96.97",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003985145.1",
                "gtdb_species": "s__Rhizobium anhuiense",
                "ani": 87.3656,
                "matched_fragments": 1642,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_001187535.1",
                "gtdb_species": "s__Rhizobium ecuadorense",
                "ani": 87.1996,
                "matched_fragments": 1511,
                "total_fragments": 2113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.23,
        "cell_length": 0.207,
        "doubling_h": 0.225,
        "growth_tmp": 28.733,
        "optimum_tmp": 28.423,
        "optimum_ph": 6.983,
        "genome_size": 6239444.624,
        "gc_content": 60.147,
        "coding_genes": 6587.615,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 51.725,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.793,
        "range_salinity": null,
        "facultative_respiration": 0.05,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.95,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Rhizobium",
        "bangladeshense"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}