{
    "type": "genome",
    "identifier": "GCF_019722725.1",
    "organism": "Vreelandella profundi",
    "title": "Vreelandella profundi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "OUC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019722725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19966097",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2852117",
        "species_taxid": "2852117",
        "organism_name": "Vreelandella profundi",
        "infraspecific_name": "strain=MT13",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/23",
        "asm_name": "ASM1972272v1",
        "asm_submitter": "OUC",
        "gbrs_paired_asm": "GCA_019722725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/722/725/GCF_019722725.1_ASM1972272v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3643760",
        "genome_size_ungapped": "3643760",
        "gc_percent": "54.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019722725.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "3352",
        "protein_coding_gene_count": "3253",
        "non_coding_gene_count": "80",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-23",
    "dateModified": "2021-08-23",
    "datePublished": "2021-08-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vreelandella profundi"
        ],
        "sample_taxid": [
            "2852117"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "1.037 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3643760",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3643760",
        "N50 (bp)": "3643760",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.0",
        "Number of CDSs": "3305",
        "Average Protein Length": "327.8",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "18",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halomonas profundi",
                "strain": "strain=MT13",
                "accession": "GCA_019722725.1",
                "taxid": 2852117,
                "species_taxid": 2852117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1212,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halomonas profundi",
                "strain": "strain=MT13",
                "accession": "GCA_019504685.1",
                "taxid": 2852117,
                "species_taxid": 2852117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9936,
                "matched_fragments": 1187,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halomonas maris",
                "strain": "strain=QX-1",
                "accession": "GCA_013371085.1",
                "taxid": 2729617,
                "species_taxid": 2729617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4297,
                "matched_fragments": 725,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas glaciei",
                "strain": "strain=DD39",
                "accession": "GCA_013415125.1",
                "taxid": 186761,
                "species_taxid": 186761,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3783,
                "matched_fragments": 744,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sedimenti",
                "strain": "strain=QX-2",
                "accession": "GCA_013416325.1",
                "taxid": 2729618,
                "species_taxid": 2729618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.193,
                "matched_fragments": 778,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas boliviensis",
                "strain": "strain=LC1",
                "accession": "GCA_000236035.1",
                "taxid": 223527,
                "species_taxid": 223527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1253,
                "matched_fragments": 732,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas titanicae",
                "strain": "strain=BH1",
                "accession": "GCA_000336575.1",
                "taxid": 664683,
                "species_taxid": 664683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1224,
                "matched_fragments": 800,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas boliviensis",
                "strain": "strain=LC1",
                "accession": "GCA_002265845.1",
                "taxid": 223527,
                "species_taxid": 223527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0946,
                "matched_fragments": 730,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas johnsoniae",
                "strain": "strain=KCTC 22157",
                "accession": "GCA_014651795.1",
                "taxid": 502832,
                "species_taxid": 502832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1387,
                "matched_fragments": 422,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidoxydans",
                "strain": "strain=MCCC 1A11059",
                "accession": "GCA_017868775.1",
                "taxid": 2733484,
                "species_taxid": 2733484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1091,
                "matched_fragments": 152,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas lysinitropha",
                "strain": "strain=3(2)",
                "accession": "GCA_902500215.1",
                "taxid": 2607506,
                "species_taxid": 2607506,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.318,
                "matched_fragments": 130,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas kenyensis",
                "strain": "strain=DSM 17331",
                "accession": "GCA_022341445.1",
                "taxid": 321266,
                "species_taxid": 321266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2864,
                "matched_fragments": 154,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002332255.1",
                "gtdb_species": "s__Halomonas sp002332255",
                "ani": 92.6861,
                "matched_fragments": 1039,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002257525.1",
                "gtdb_species": "s__Halomonas ventosae_B",
                "ani": 81.6533,
                "matched_fragments": 808,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000235725.1",
                "gtdb_species": "s__Halomonas sp000235725",
                "ani": 81.4881,
                "matched_fragments": 732,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.32",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013371085.1",
                "gtdb_species": "s__Halomonas maris",
                "ani": 81.4297,
                "matched_fragments": 725,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001882345.1",
                "gtdb_species": "s__Halomonas sp001882345",
                "ani": 81.4229,
                "matched_fragments": 771,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004364445.1",
                "gtdb_species": "s__Halomonas alkaliantarctica",
                "ani": 81.2724,
                "matched_fragments": 780,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_001507855.1",
                "gtdb_species": "s__Halomonas sp001507855",
                "ani": 81.2555,
                "matched_fragments": 640,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013416325.1",
                "gtdb_species": "s__Halomonas sedimenti",
                "ani": 81.1945,
                "matched_fragments": 779,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.54",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000236035.1",
                "gtdb_species": "s__Halomonas boliviensis",
                "ani": 81.1212,
                "matched_fragments": 733,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000336575.1",
                "gtdb_species": "s__Halomonas titanicae",
                "ani": 81.1189,
                "matched_fragments": 799,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCA_002366715.1",
                "gtdb_species": "s__Halomonas sp002366715",
                "ani": 81.0772,
                "matched_fragments": 690,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001651035.1",
                "gtdb_species": "s__Halomonas sp001651035",
                "ani": 81.0531,
                "matched_fragments": 725,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "97.57",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002211105.1",
                "gtdb_species": "s__Halomonas campaniensis_A",
                "ani": 80.962,
                "matched_fragments": 751,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011050415.1",
                "gtdb_species": "s__Halomonas sp011050415",
                "ani": 80.8007,
                "matched_fragments": 730,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007991175.1",
                "gtdb_species": "s__Halomonas variabilis",
                "ani": 80.7803,
                "matched_fragments": 648,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Vreelandella",
        "profundi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}