{
    "type": "genome",
    "identifier": "GCF_019734885.1",
    "organism": "Coprococcus catus",
    "title": "Coprococcus catus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Wageningen University and Research",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019734885.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14515131",
        "wgs_master": "JAAXCM000000000.1",
        "refseq_category": "reference genome",
        "taxid": "116085",
        "species_taxid": "116085",
        "organism_name": "Coprococcus catus",
        "infraspecific_name": "strain=VPIC661",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/23",
        "asm_name": "ASM1973488v1",
        "asm_submitter": "Wageningen University and Research",
        "gbrs_paired_asm": "GCA_019734885.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/734/885/GCF_019734885.1_ASM1973488v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3599035",
        "genome_size_ungapped": "3598073",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "67",
        "contig_count": "67",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019734885.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3420",
        "protein_coding_gene_count": "3273",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-23",
    "dateModified": "2021-08-23",
    "datePublished": "2021-08-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Coprococcus catus"
        ],
        "sample_taxid": [
            "116085"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.018 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 37.0,
            "max": 37.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3599035",
        "Number of Sequences": "67",
        "Longest Sequences (bp)": "421556",
        "N50 (bp)": "133469",
        "Gap Ratio (%)": "0.026729",
        "GCcontent (%)": "42.9",
        "Number of CDSs": "3338",
        "Average Protein Length": "313.8",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Coprococcus catus",
                "strain": "strain=VPIC661",
                "accession": "GCA_019734885.1",
                "taxid": 116085,
                "species_taxid": 116085,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1164,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Coprococcus catus",
                "strain": "strain=ATCC 27761",
                "accession": "GCA_025289135.1",
                "taxid": 116085,
                "species_taxid": 116085,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.992,
                "matched_fragments": 1141,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Eisenbergiella massiliensis",
                "strain": "strain=AT11",
                "accession": "GCA_900243045.1",
                "taxid": 1720294,
                "species_taxid": 1720294,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1807,
                "matched_fragments": 80,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_900537995.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4976,
                "matched_fragments": 99,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1 82",
                "accession": "GCA_025151715.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3721,
                "matched_fragments": 104,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0728,
                "matched_fragments": 97,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia wexlerae",
                "strain": "strain=DSM 19850",
                "accession": "GCA_025148125.1",
                "taxid": 418240,
                "species_taxid": 418240,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.9471,
                "matched_fragments": 172,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia wexlerae",
                "strain": "strain=DSM 19850",
                "accession": "GCA_000484655.1",
                "taxid": 418240,
                "species_taxid": 418240,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.6318,
                "matched_fragments": 165,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.9877,
                "matched_fragments": 89,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus comes",
                "strain": "strain=ATCC 27758",
                "accession": "GCA_025149785.1",
                "taxid": 410072,
                "species_taxid": 410072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9715,
                "matched_fragments": 124,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.8669,
                "matched_fragments": 89,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_002959615.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.8249,
                "matched_fragments": 87,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Murimonas intestini",
                "strain": "strain=DSM 26524",
                "accession": "GCA_024622195.1",
                "taxid": 1337051,
                "species_taxid": 1337051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4266,
                "matched_fragments": 54,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerobutyricum hallii",
                "strain": "strain=DSM 3353",
                "accession": "GCA_000173975.1",
                "taxid": 39488,
                "species_taxid": 39488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2521,
                "matched_fragments": 79,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=FDAARGOS_1529",
                "accession": "GCA_020297485.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9995,
                "matched_fragments": 56,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=ATCC 25537",
                "accession": "GCA_900113155.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9966,
                "matched_fragments": 56,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frisingicoccus caecimuris",
                "strain": "strain=DSM 28559",
                "accession": "GCA_024622585.1",
                "taxid": 1796636,
                "species_taxid": 1796636,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8535,
                "matched_fragments": 103,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=NCTC11224",
                "accession": "GCA_900447015.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.7374,
                "matched_fragments": 53,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frisingicoccus caecimuris",
                "strain": "strain=DSM 28559",
                "accession": "GCA_004340975.1",
                "taxid": 1796636,
                "species_taxid": 1796636,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7102,
                "matched_fragments": 104,
                "total_fragments": 1169,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018785175.1",
                "gtdb_species": "s__Coprococcus_A sp900548825",
                "ani": 97.2932,
                "matched_fragments": 887,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.21",
                "min_intra_species_ani": "98.06",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_902381825.1",
                "gtdb_species": "s__Coprococcus_A catus",
                "ani": 90.5969,
                "matched_fragments": 788,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_018223435.1",
                "gtdb_species": "s__Limivivens sp900543575",
                "ani": 82.7206,
                "matched_fragments": 74,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Limivivens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "97.88",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_013300725.1",
                "gtdb_species": "s__Bariatricus comes_A",
                "ani": 80.9654,
                "matched_fragments": 109,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Bariatricus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.85",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013304825.1",
                "gtdb_species": "s__Blautia_A schinkii",
                "ani": 80.4425,
                "matched_fragments": 105,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_016297495.1",
                "gtdb_species": "s__Coprococcus_A sp016297495",
                "ani": 79.3792,
                "matched_fragments": 314,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016298055.1",
                "gtdb_species": "s__Frisingicoccus sp016298055",
                "ani": 77.8445,
                "matched_fragments": 89,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Frisingicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.75",
                "min_intra_species_ani": "95.75",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004340975.1",
                "gtdb_species": "s__Frisingicoccus caecimuris",
                "ani": 77.6788,
                "matched_fragments": 105,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Frisingicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900764225.1",
                "gtdb_species": "s__Blautia_A sp900764225",
                "ani": 77.4865,
                "matched_fragments": 67,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905199445.1",
                "gtdb_species": "s__Catenibacillus sp900553975",
                "ani": 76.9924,
                "matched_fragments": 78,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Catenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018716485.1",
                "gtdb_species": "s__Scybalocola faecipullorum",
                "ani": 76.9847,
                "matched_fragments": 59,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Scybalocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900757195.1",
                "gtdb_species": "s__Frisingicoccus sp900757195",
                "ani": 76.7504,
                "matched_fragments": 81,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Frisingicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900549105.1",
                "gtdb_species": "s__Frisingicoccus sp900549105",
                "ani": 76.6835,
                "matched_fragments": 75,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Frisingicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902787905.1",
                "gtdb_species": "s__UBA2912 sp902787905",
                "ani": 76.3864,
                "matched_fragments": 62,
                "total_fragments": 1169,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA2912",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.7,
        "genome_size": 3522704.0,
        "gc_content": 42.43,
        "coding_genes": 2985.0,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Coprococcus",
        "catus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}