{ "type": "genome", "identifier": "GCF_019740315.1", "organism": "Oceanobacter mangrovi", "title": "Oceanobacter mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quanzhou Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019740315.1", "bioproject": "PRJNA224116", "biosample": "SAMN20368532", "wgs_master": "JAHXZR000000000.1", "refseq_category": "reference genome", "taxid": "2862510", "species_taxid": "2862510", "organism_name": "Oceanobacter mangrovi", "infraspecific_name": "strain=SM2-42", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/24", "asm_name": "ASM1974031v1", "asm_submitter": "Quanzhou Normal University", "gbrs_paired_asm": "GCA_019740315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/740/315/GCF_019740315.1_ASM1974031v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5115008", "genome_size_ungapped": "5115008", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019740315.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4619", "protein_coding_gene_count": "4526", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-24", "dateModified": "2021-08-24", "datePublished": "2021-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacter mangrovi" ], "sample_taxid": [ "2862510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Quanzhou Bay" ], "sample_host_location_id": [], "data_size": "1.445 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5115008", "Number of Sequences": "30", "Longest Sequences (bp)": "954929", "N50 (bp)": "434753", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.3", "Number of CDSs": "4571", "Average Protein Length": "328.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "1", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacter mangrovi", "strain": "strain=SM2-42", "accession": "GCA_019740315.1", "taxid": 2862510, "species_taxid": 2862510, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1689, "total_fragments": 1690, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oceanobacter kriegii", "strain": "strain=DSM 6294", "accession": "GCA_000422845.1", "taxid": 64972, "species_taxid": 64972, "relation_to_type": "type", "validated": true, "ani": 80.2156, "matched_fragments": 736, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassolituus marinus", "strain": "strain=IMCC1826", "accession": "GCA_020320395.1", "taxid": 671053, "species_taxid": 671053, "relation_to_type": "type", "validated": true, "ani": 78.188, "matched_fragments": 280, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleibacter marinus", "strain": "strain=DSM 24913", "accession": "GCA_900156675.1", "taxid": 484498, "species_taxid": 484498, "relation_to_type": "type", "validated": true, "ani": 78.0639, "matched_fragments": 155, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacterioplanes 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"accession": "GCA_016820575.1", "taxid": 256323, "species_taxid": 256323, "relation_to_type": "type", "validated": true, "ani": 76.5293, "matched_fragments": 73, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 76.452, "matched_fragments": 92, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella litorisediminis", "strain": "strain=CCUG 62411", "accession": "GCA_023349165.1", "taxid": 1173586, "species_taxid": 1173586, "relation_to_type": "type", "validated": true, "ani": 76.3822, "matched_fragments": 67, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, 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75.6869, "matched_fragments": 79, "total_fragments": 1690, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000422845.1", "gtdb_species": "s__Oceanobacter kriegii", "ani": 80.2112, "matched_fragments": 737, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oceanobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002723385.1", "gtdb_species": "s__Oceanobacter sp002723385", "ani": 78.2923, "matched_fragments": 232, "total_fragments": 1690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oceanobacter", "ani_circumscription_radius": 95.0, 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