{
    "type": "genome",
    "identifier": "GCF_019740355.2",
    "organism": "Paracrocinitomix mangrovi",
    "title": "Paracrocinitomix mangrovi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Quanzhou Normal University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019740355.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20368531",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2862509",
        "species_taxid": "2862509",
        "organism_name": "Paracrocinitomix mangrovi",
        "infraspecific_name": "strain=GM2-3-6-6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/07",
        "asm_name": "ASM1974035v2",
        "asm_submitter": "Quanzhou Normal University",
        "gbrs_paired_asm": "GCA_019740355.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/740/355/GCF_019740355.2_ASM1974035v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4365762",
        "genome_size_ungapped": "4365762",
        "gc_percent": "35.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-08",
        "total_gene_count": "3879",
        "protein_coding_gene_count": "3807",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-07",
    "dateModified": "2022-02-07",
    "datePublished": "2022-02-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paracrocinitomix mangrovi"
        ],
        "sample_taxid": [
            "2862509"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Quanzhou Bay"
        ],
        "sample_host_location_id": [],
        "data_size": "1.213 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4365762",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4365762",
        "N50 (bp)": "4365762",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.0",
        "Number of CDSs": "3816",
        "Average Protein Length": "351.1",
        "Coding Ratio (%)": "92.1",
        "Number of rRNAs": "4",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lishizhenia tianjinensis",
                "strain": "strain=CGMCC 1.7005",
                "accession": "GCA_900116425.1",
                "taxid": 477690,
                "species_taxid": 477690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7141,
                "matched_fragments": 53,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Putridiphycobacter roseus",
                "strain": "strain=SM1701",
                "accession": "GCA_003234935.1",
                "taxid": 2219161,
                "species_taxid": 2219161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3123,
                "matched_fragments": 85,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crocinitomix catalasitica",
                "strain": "strain=ATCC 23190",
                "accession": "GCA_000621625.1",
                "taxid": 184607,
                "species_taxid": 184607,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1323,
                "matched_fragments": 122,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crocinitomix algicola",
                "strain": "strain=0182",
                "accession": "GCA_001661595.2",
                "taxid": 1740263,
                "species_taxid": 1740263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0956,
                "matched_fragments": 86,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fluviicola taffensis",
                "strain": "strain=DSM 16823",
                "accession": "GCA_000194605.1",
                "taxid": 191579,
                "species_taxid": 191579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0608,
                "matched_fragments": 53,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brumimicrobium mesophilum",
                "strain": "strain=JCM 14063",
                "accession": "GCA_003025005.1",
                "taxid": 392717,
                "species_taxid": 392717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8518,
                "matched_fragments": 54,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureivirga marina",
                "strain": "strain=LMG 26721",
                "accession": "GCA_015767265.1",
                "taxid": 1182451,
                "species_taxid": 1182451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7634,
                "matched_fragments": 58,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014762645.1",
                "gtdb_species": "s__JABURP01 sp014762645",
                "ani": 77.2769,
                "matched_fragments": 231,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__JABURP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116425.1",
                "gtdb_species": "s__Lishizhenia tianjinensis",
                "ani": 76.7141,
                "matched_fragments": 53,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Lishizhenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016709005.1",
                "gtdb_species": "s__JADJGJ01 sp016709005",
                "ani": 76.6091,
                "matched_fragments": 101,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__JADJGJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016192075.1",
                "gtdb_species": "s__JADJGJ01 sp016192075",
                "ani": 76.491,
                "matched_fragments": 70,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__JADJGJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905478225.1",
                "gtdb_species": "s__Crocinitomix sp905478225",
                "ani": 76.433,
                "matched_fragments": 93,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Crocinitomix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000194605.1",
                "gtdb_species": "s__Fluviicola taffensis",
                "ani": 76.3367,
                "matched_fragments": 54,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003234935.1",
                "gtdb_species": "s__Putridiphycobacter roseus",
                "ani": 76.3123,
                "matched_fragments": 85,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Putridiphycobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000621625.1",
                "gtdb_species": "s__Crocinitomix catalasitica",
                "ani": 76.1323,
                "matched_fragments": 122,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Crocinitomix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001661595.2",
                "gtdb_species": "s__Crocinitomix algicola",
                "ani": 76.0956,
                "matched_fragments": 86,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Crocinitomix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013138735.1",
                "gtdb_species": "s__Crocinitomix sp013138735",
                "ani": 76.0913,
                "matched_fragments": 119,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Crocinitomix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015662905.1",
                "gtdb_species": "s__Putridiphycobacter sp015662905",
                "ani": 75.9636,
                "matched_fragments": 67,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Putridiphycobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Paracrocinitomix",
        "mangrovi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}