{
    "type": "genome",
    "identifier": "GCF_019753765.1",
    "organism": "Microbacterium marinilacus",
    "title": "Microbacterium marinilacus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "School of life science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019753765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20826684",
        "wgs_master": "JAIJZW000000000.1",
        "refseq_category": "na",
        "taxid": "415209",
        "species_taxid": "415209",
        "organism_name": "Microbacterium marinilacus",
        "infraspecific_name": "strain=YM11-607",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/25",
        "asm_name": "ASM1975376v1",
        "asm_submitter": "School of life science",
        "gbrs_paired_asm": "GCA_019753765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/753/765/GCF_019753765.1_ASM1975376v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3888012",
        "genome_size_ungapped": "3887882",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019753765.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "3719",
        "protein_coding_gene_count": "3630",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-25",
    "dateModified": "2021-08-25",
    "datePublished": "2021-08-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbacterium marinilacus"
        ],
        "sample_taxid": [
            "415209"
        ],
        "sample_host_organism": [
            "Hydra"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Palau"
        ],
        "sample_host_location_id": [],
        "data_size": "1.032 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3888012",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "748259",
        "N50 (bp)": "371260",
        "Gap Ratio (%)": "0.003344",
        "GCcontent (%)": "71.7",
        "Number of CDSs": "3679",
        "Average Protein Length": "325.0",
        "Coding Ratio (%)": "92.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbacterium marinilacus",
                "strain": "strain=YM11-607",
                "accession": "GCA_019753765.1",
                "taxid": 415209,
                "species_taxid": 415209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1283,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microbacterium stercoris",
                "strain": "strain=NEAU-LLB",
                "accession": "GCA_017592545.1",
                "taxid": 2820289,
                "species_taxid": 2820289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9915,
                "matched_fragments": 663,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium album",
                "strain": "strain=CGMCC 1.15794",
                "accession": "GCA_014643695.1",
                "taxid": 2053191,
                "species_taxid": 2053191,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9015,
                "matched_fragments": 618,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium sediminis",
                "strain": "strain=YLB-01",
                "accession": "GCA_004564075.1",
                "taxid": 904291,
                "species_taxid": 904291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5373,
                "matched_fragments": 576,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium sediminis",
                "strain": "strain=YLB-01",
                "accession": "GCA_001689915.1",
                "taxid": 904291,
                "species_taxid": 904291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4081,
                "matched_fragments": 575,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium sediminis",
                "strain": "strain=YLB-01",
                "accession": "GCA_002741995.1",
                "taxid": 904291,
                "species_taxid": 904291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3248,
                "matched_fragments": 582,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium oryzae",
                "strain": "strain=MB-10",
                "accession": "GCA_009735645.1",
                "taxid": 743009,
                "species_taxid": 743009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7249,
                "matched_fragments": 540,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium commune",
                "strain": "strain=Re1",
                "accession": "GCA_014836945.1",
                "taxid": 2762219,
                "species_taxid": 2762219,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9751,
                "matched_fragments": 431,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium gallinarum",
                "strain": "strain=Sa1CUA4",
                "accession": "GCA_014837165.1",
                "taxid": 2762209,
                "species_taxid": 2762209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8005,
                "matched_fragments": 501,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium bovistercoris",
                "strain": "strain=NEAU-LLE",
                "accession": "GCA_003387575.1",
                "taxid": 2293570,
                "species_taxid": 2293570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4711,
                "matched_fragments": 499,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium invictum",
                "strain": "strain=DSM 19600",
                "accession": "GCA_023155715.1",
                "taxid": 515415,
                "species_taxid": 515415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4236,
                "matched_fragments": 452,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001426925.1",
                "gtdb_species": "s__Microbacterium sp001426925",
                "ani": 83.5718,
                "matched_fragments": 652,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015235415.1",
                "gtdb_species": "s__Microbacterium paludicola_A",
                "ani": 83.5543,
                "matched_fragments": 668,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016805985.1",
                "gtdb_species": "s__Microbacterium sp016805985",
                "ani": 83.3205,
                "matched_fragments": 702,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017592545.1",
                "gtdb_species": "s__Microbacterium sp017592545",
                "ani": 81.986,
                "matched_fragments": 663,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014643695.1",
                "gtdb_species": "s__Microbacterium album",
                "ani": 81.8895,
                "matched_fragments": 619,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004564075.1",
                "gtdb_species": "s__Microbacterium sediminis",
                "ani": 81.4898,
                "matched_fragments": 580,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.125,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 9.0,
        "genome_size": 3469503.118,
        "gc_content": 69.764,
        "coding_genes": 3206.916,
        "rRNA16S_genes": 1.75,
        "tRNA_genes": 50.166,
        "gram_stain": 1.0,
        "sporulation": 0.111,
        "motility": 0.289,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Microbacterium",
        "marinilacus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}