{
    "type": "genome",
    "identifier": "GCF_019754945.1",
    "organism": "Corynebacterium pseudokroppenstedtii",
    "title": "Corynebacterium pseudokroppenstedtii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Second Clinical College, Guangzhou University of Chinese Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019754945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17488020",
        "wgs_master": "JAEUWU000000000.1",
        "refseq_category": "na",
        "taxid": "2804917",
        "species_taxid": "2804917",
        "organism_name": "Corynebacterium pseudokroppenstedtii",
        "infraspecific_name": "strain=MC-17X",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/25",
        "asm_name": "ASM1975494v1",
        "asm_submitter": "The Second Clinical College, Guangzhou University of Chinese Medicine",
        "gbrs_paired_asm": "GCA_019754945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/754/945/GCF_019754945.1_ASM1975494v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2473808",
        "genome_size_ungapped": "2473808",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019754945.1-RS_2024_04_05",
        "annotation_date": "2024-04-05",
        "total_gene_count": "2131",
        "protein_coding_gene_count": "2043",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-25",
    "dateModified": "2021-08-25",
    "datePublished": "2021-08-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium pseudokroppenstedtii"
        ],
        "sample_taxid": [
            "2804917"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.707 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2473808",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "696591",
        "N50 (bp)": "482662",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.2",
        "Number of CDSs": "2140",
        "Average Protein Length": "332.1",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corynebacterium pseudokroppenstedtii",
                "strain": "strain=MC-17X",
                "accession": "GCA_019754945.1",
                "taxid": 2804917,
                "species_taxid": 2804917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 819,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium kroppenstedtii",
                "strain": "strain=FDAARGOS_1192",
                "accession": "GCA_016889365.1",
                "taxid": 161879,
                "species_taxid": 161879,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.6492,
                "matched_fragments": 780,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium kroppenstedtii",
                "strain": "strain=DSM 44385",
                "accession": "GCA_000023145.1",
                "taxid": 161879,
                "species_taxid": 161879,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.6432,
                "matched_fragments": 780,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium parakroppenstedtii",
                "strain": "strain=MC-26",
                "accession": "GCA_019754935.1",
                "taxid": 2828363,
                "species_taxid": 2828363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7071,
                "matched_fragments": 780,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium falsenii",
                "strain": "strain=FDAARGOS_1494",
                "accession": "GCA_020099275.1",
                "taxid": 108486,
                "species_taxid": 108486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7939,
                "matched_fragments": 80,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium aquilae",
                "strain": "strain=S-613",
                "accession": "GCA_001941445.1",
                "taxid": 203263,
                "species_taxid": 203263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6543,
                "matched_fragments": 68,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium gallinarum",
                "strain": "strain=Sa1YVA5",
                "accession": "GCA_014837045.1",
                "taxid": 2762214,
                "species_taxid": 2762214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2827,
                "matched_fragments": 61,
                "total_fragments": 819,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016889405.1",
                "gtdb_species": "s__Corynebacterium kroppenstedtii_C",
                "ani": 98.5843,
                "matched_fragments": 791,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000023145.1",
                "gtdb_species": "s__Corynebacterium kroppenstedtii",
                "ani": 93.6432,
                "matched_fragments": 780,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001552955.1",
                "gtdb_species": "s__Corynebacterium kroppenstedtii_A",
                "ani": 92.695,
                "matched_fragments": 778,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_003243515.1",
                "gtdb_species": "s__Corynebacterium kroppenstedtii_B",
                "ani": 92.1704,
                "matched_fragments": 714,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016894245.1",
                "gtdb_species": "s__Corynebacterium sp902373425",
                "ani": 90.1688,
                "matched_fragments": 762,
                "total_fragments": 819,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 35.111,
        "optimum_tmp": 35.173,
        "optimum_ph": 7.292,
        "genome_size": 2639223.511,
        "gc_content": 59.791,
        "coding_genes": 2390.094,
        "rRNA16S_genes": 4.282,
        "tRNA_genes": 52.979,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 0.231,
        "anaerobic_respiration": 0.063,
        "aerobic_respiration": 0.705,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.985,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.014,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "pseudokroppenstedtii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}