{ "type": "genome", "identifier": "GCF_019793235.1", "organism": "Sphingopyxis jiangsuensis", "title": "Sphingopyxis jiangsuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hohai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019793235.1", "bioproject": "PRJNA224116", "biosample": "SAMN20857034", "wgs_master": "JAILXK000000000.1", "refseq_category": "na", "taxid": "2871171", "species_taxid": "2871171", "organism_name": "Sphingopyxis jiangsuensis", "infraspecific_name": "strain=XHP0097", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/28", "asm_name": "ASM1979323v1", "asm_submitter": "Hohai University", "gbrs_paired_asm": "GCA_019793235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/793/235/GCF_019793235.1_ASM1979323v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3073368", "genome_size_ungapped": "3073368", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019793235.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "2972", "protein_coding_gene_count": "2902", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-28", "dateModified": "2021-08-28", "datePublished": "2021-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis jiangsuensis" ], "sample_taxid": [ "2871171" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiangsu" ], "sample_host_location_id": [], "data_size": "0.843 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3073368", "Number of Sequences": "6", "Longest Sequences (bp)": "1705527", "N50 (bp)": "1705527", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "2918", "Average Protein Length": "320.2", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis alaskensis", "strain": "strain=RB2256", "accession": "GCA_000013985.1", "taxid": 117207, "species_taxid": 117207, "relation_to_type": "type", "validated": true, "ani": 84.3288, "matched_fragments": 731, "total_fragments": 1022, "ani_threshold": 95, 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"Sphingopyxis soli", "strain": "strain=BL03", "accession": "GCA_018682675.1", "taxid": 592051, "species_taxid": 592051, "relation_to_type": "type", "validated": true, "ani": 83.6307, "matched_fragments": 702, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis panaciterrulae", "strain": "strain=DSM 27163", "accession": "GCA_014199295.1", "taxid": 462372, "species_taxid": 462372, "relation_to_type": "type", "validated": true, "ani": 83.521, "matched_fragments": 748, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis granuli", "strain": "strain=NBRC 100800", "accession": "GCA_001591045.1", "taxid": 267128, "species_taxid": 267128, "relation_to_type": "type", "validated": true, "ani": 83.5066, "matched_fragments": 674, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis microcysteis", "strain": "strain=Z10-6", "accession": "GCA_012274265.1", "taxid": 2484145, "species_taxid": 2484145, "relation_to_type": "type", "validated": true, "ani": 83.4881, "matched_fragments": 746, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis macrogoltabida", "strain": "strain=203", "accession": "GCA_001314325.1", "taxid": 33050, "species_taxid": 33050, "relation_to_type": "type", "validated": true, "ani": 83.4246, "matched_fragments": 785, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. terrae", "strain": "strain=NBRC 15098", "accession": "GCA_001598815.1", "taxid": 2448440, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 83.3974, "matched_fragments": 716, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=DSM 24316", "accession": "GCA_002374275.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 83.3833, "matched_fragments": 716, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=UI2", "accession": "GCA_900177755.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 83.3204, "matched_fragments": 725, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis fribergensis", "strain": "strain=Kp5.2", "accession": "GCA_000803645.1", "taxid": 1515612, "species_taxid": 1515612, "relation_to_type": "type", "validated": true, "ani": 83.2969, "matched_fragments": 777, "total_fragments": 1022, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. terrae", "strain": "strain=203-1", "accession": "GCA_001610975.1", "taxid": 2448440, 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736, "total_fragments": 1022, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900078365.1", "gtdb_species": "s__Sphingopyxis sp900078365", "ani": 84.2411, "matched_fragments": 777, "total_fragments": 1022, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000756375.1", "gtdb_species": "s__Sphingopyxis sp000756375", "ani": 83.9301, "matched_fragments": 773, "total_fragments": 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