{ "type": "genome", "identifier": "GCF_019793435.1", "organism": "Rhizobium redzepovicii", "title": "Rhizobium redzepovicii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019793435.1", "bioproject": "PRJNA224116", "biosample": "SAMN20700946", "wgs_master": "JAILYH000000000.1", "refseq_category": "reference genome", "taxid": "2867518", "species_taxid": "2867518", "organism_name": "Rhizobium redzepovicii", "infraspecific_name": "strain=18T", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/28", "asm_name": "ASM1979343v1", "asm_submitter": "CSIC", "gbrs_paired_asm": "GCA_019793435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/793/435/GCF_019793435.1_ASM1979343v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7006639", "genome_size_ungapped": "7006639", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "134", "contig_count": "134", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019793435.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "6849", "protein_coding_gene_count": "6528", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-28", "dateModified": "2021-08-28", "datePublished": "2021-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium redzepovicii" ], "sample_taxid": [ "2867518" ], "sample_host_organism": [ "Phaseolus vulgaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Croatia" ], "sample_host_location_id": [], "data_size": "1.958 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7006639", "Number of Sequences": "134", "Longest Sequences (bp)": "518846", "N50 (bp)": "303501", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.1", "Number of CDSs": "6669", "Average Protein Length": "299.5", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2293, "total_fragments": 2295, "ani_threshold": 95, 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croatiense", "strain": "strain=13T", "accession": "GCA_019793465.1", "taxid": 2867516, "species_taxid": 2867516, "relation_to_type": "type", "validated": true, "ani": 89.7892, "matched_fragments": 1723, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium phaseoli", "strain": "strain=ATCC 14482", "accession": "GCA_003985125.1", "taxid": 396, "species_taxid": 396, "relation_to_type": "type", "validated": true, "ani": 89.2215, "matched_fragments": 1729, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium changzhiense", "strain": "strain=WYCCWR 11279", "accession": "GCA_013087625.1", "taxid": 2692317, "species_taxid": 2692317, "relation_to_type": "type", "validated": true, "ani": 89.1785, "matched_fragments": 1629, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium ruizarguesonis", "strain": "strain=UPM1133", "accession": "GCA_012349115.1", "taxid": 2081791, "species_taxid": 2081791, "relation_to_type": "type", "validated": true, "ani": 89.1603, "matched_fragments": 1741, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium anhuiense", "strain": "strain=CGMCC 1.12621", "accession": "GCA_014638185.1", "taxid": 1184720, "species_taxid": 1184720, "relation_to_type": "type", "validated": true, "ani": 89.1249, "matched_fragments": 1756, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophoriradicis", "strain": "strain=CCBAU 03470", "accession": "GCA_003939025.1", "taxid": 1535245, "species_taxid": 1535245, "relation_to_type": "type", "validated": true, "ani": 89.086, "matched_fragments": 1691, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophorae", "strain": "strain=CCBAU 03386", "accession": "GCA_013087515.1", "taxid": 1535242, 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