{ "type": "genome", "identifier": "GCF_019795155.1", "organism": "Marinobacterium arenosum", "title": "Marinobacterium arenosum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019795155.1", "bioproject": "PRJNA224116", "biosample": "SAMN20345381", "wgs_master": "JAILYN000000000.1", "refseq_category": "reference genome", "taxid": "2862496", "species_taxid": "2862496", "organism_name": "Marinobacterium arenosum", "infraspecific_name": "strain=CAU 1594", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/29", "asm_name": "ASM1979515v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_019795155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/795/155/GCF_019795155.1_ASM1979515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4802898", "genome_size_ungapped": "4802598", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019795155.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4304", "protein_coding_gene_count": "4192", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-29", "dateModified": "2021-08-29", "datePublished": "2021-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacterium arenosum" ], "sample_taxid": [ "2862496" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.345 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4802898", "Number of Sequences": "115", "Longest Sequences (bp)": "223372", "N50 (bp)": "83241", "Gap Ratio (%)": "0.006246", "GCcontent (%)": "60.8", "Number of CDSs": "4214", "Average Protein Length": "324.1", "Coding Ratio (%)": "85.3", "Number of rRNAs": "2", "Number of tRNAs": "77", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1541, "total_fragments": 1546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacterium ramblicola", "strain": "strain=D7", "accession": "GCA_019084545.1", "taxid": 2849041, "species_taxid": 2849041, "relation_to_type": "type", "validated": true, "ani": 79.5831, "matched_fragments": 466, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium nitratireducens", "strain": "strain=CGMCC 1.7286", "accession": "GCA_014645375.1", "taxid": 518897, "species_taxid": 518897, "relation_to_type": "type", "validated": true, "ani": 79.2148, "matched_fragments": 488, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium zhoushanense", "strain": "strain=CGMCC 1.15341", "accession": "GCA_014641945.1", "taxid": 1679163, "species_taxid": 1679163, "relation_to_type": "type", "validated": true, "ani": 79.1008, "matched_fragments": 447, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium jannaschii", "strain": "strain=DSM 6295", "accession": "GCA_000620085.1", "taxid": 64970, "species_taxid": 64970, "relation_to_type": "type", "validated": true, "ani": 78.3852, "matched_fragments": 386, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 78.2971, "matched_fragments": 352, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium mangrovicola", "strain": "strain=DSM 27697", "accession": "GCA_004339595.1", "taxid": 1476959, "species_taxid": 1476959, "relation_to_type": "type", "validated": true, "ani": 78.2943, "matched_fragments": 332, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium aestuarii", "strain": "strain=ST58-10", "accession": "GCA_001651805.1", "taxid": 1821621, "species_taxid": 1821621, "relation_to_type": "type", "validated": true, "ani": 78.1705, "matched_fragments": 368, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium georgiense", "strain": "strain=DSM 11526", "accession": "GCA_900107855.1", "taxid": 48076, "species_taxid": 48076, "relation_to_type": "type", "validated": true, "ani": 78.0511, "matched_fragments": 250, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium rhizophilum", "strain": "strain=DSM 18822", "accession": "GCA_000378045.1", "taxid": 420402, "species_taxid": 420402, "relation_to_type": "type", "validated": true, "ani": 78.0387, "matched_fragments": 352, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium profundum", "strain": "strain=PAMC 27536", "accession": "GCA_001528745.1", "taxid": 1714300, "species_taxid": 1714300, "relation_to_type": "type", "validated": true, "ani": 77.7457, "matched_fragments": 307, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 77.7362, "matched_fragments": 344, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 77.4591, "matched_fragments": 281, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 77.4101, "matched_fragments": 286, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 77.3781, "matched_fragments": 304, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2533, "matched_fragments": 272, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, 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