{ "type": "genome", "identifier": "GCF_019798055.1", "organism": "Salsipaludibacter albus", "title": "Salsipaludibacter albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Interdisciplinary Centre of Marine and Environmental Research - CIIMAR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019798055.1", "bioproject": "PRJNA224116", "biosample": "SAMN19763611", "wgs_master": "JAHOPH000000000.1", "refseq_category": "reference genome", "taxid": "2849650", "species_taxid": "2849650", "organism_name": "Salsipaludibacter albus", "infraspecific_name": "strain=AS10", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/30", "asm_name": "AS10", "asm_submitter": "Interdisciplinary Centre of Marine and Environmental Research - CIIMAR", "gbrs_paired_asm": "GCA_019798055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/798/055/GCF_019798055.1_AS10", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4246067", "genome_size_ungapped": "4245511", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019798055.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "3747", "protein_coding_gene_count": "3683", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-30", "dateModified": "2021-08-30", "datePublished": "2021-08-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Salsipaludibacter albus" ], "sample_taxid": [ "2849650" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: north shoreline, Aveiro" ], "sample_host_location_id": [], "data_size": "1.122 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4246067", "Number of Sequences": "79", "Longest Sequences (bp)": "384676", "N50 (bp)": "123821", "Gap Ratio (%)": "0.013330", "GCcontent (%)": "71.8", "Number of CDSs": "3649", "Average Protein Length": "344.5", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salsipaludibacter albus", "strain": "strain=AS10", "accession": "GCA_019798055.1", "taxid": 2849650, "species_taxid": 2849650, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1378, "total_fragments": 1381, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Egicoccus halophilus", "strain": "strain=EGI 80432", "accession": "GCA_004300825.1", "taxid": 1670830, "species_taxid": 1670830, "relation_to_type": "type", "validated": true, "ani": 77.1804, "matched_fragments": 384, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Egicoccus halophilus", "strain": "strain=CGMCC 1.14988", "accession": "GCA_014640475.1", "taxid": 1670830, "species_taxid": 1670830, "relation_to_type": "type", "validated": true, "ani": 77.1274, "matched_fragments": 380, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitriliruptor alkaliphilus", "strain": "strain=DSM 45188", "accession": "GCA_000969705.1", "taxid": 427918, "species_taxid": 427918, "relation_to_type": "type", "validated": true, "ani": 76.9838, "matched_fragments": 398, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euzebya rosea", "strain": "strain=DSW09", "accession": "GCA_003073135.1", "taxid": 2052804, "species_taxid": 2052804, "relation_to_type": "type", "validated": true, "ani": 76.068, "matched_fragments": 319, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euzebya pacifica", "strain": "strain=DY32-46", "accession": "GCA_003344865.1", "taxid": 1608957, "species_taxid": 1608957, "relation_to_type": "type", "validated": true, "ani": 76.0188, "matched_fragments": 320, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Egibacter rhizosphaerae", "strain": "strain=EGI 80759", "accession": "GCA_004322855.1", "taxid": 1670831, "species_taxid": 1670831, "relation_to_type": "type", "validated": true, "ani": 75.5175, "matched_fragments": 206, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus flavus", "strain": "strain=CMS6Z-2", "accession": "GCA_004025965.2", "taxid": 2502783, "species_taxid": 2502783, "relation_to_type": "type", "validated": true, "ani": 75.4833, "matched_fragments": 265, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citricoccus zhacaiensis", "strain": "strain=CGMCC 1.7064", "accession": "GCA_014645315.1", "taxid": 489142, "species_taxid": 489142, "relation_to_type": "type", "validated": true, "ani": 75.349, "matched_fragments": 84, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 75.3456, "matched_fragments": 247, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lexingtonensis", "strain": "strain=DSM 44653", "accession": "GCA_014873755.1", "taxid": 218822, "species_taxid": 218822, "relation_to_type": "type", "validated": true, "ani": 75.2128, "matched_fragments": 380, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis eburnea", "strain": "strain=GLM-1", "accession": "GCA_003937945.1", "taxid": 2267691, "species_taxid": 2267691, "relation_to_type": "type", "validated": true, "ani": 75.1936, "matched_fragments": 366, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=DSM 45648", "accession": "GCA_004365925.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 75.1803, "matched_fragments": 277, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 75.1741, "matched_fragments": 262, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=CGMCC 4.5579", "accession": "GCA_900115565.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 75.17, "matched_fragments": 272, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lexingtonensis", "strain": "strain=NRRL B-24131", "accession": "GCA_002156005.1", "taxid": 218822, "species_taxid": 218822, "relation_to_type": "type", "validated": true, "ani": 75.1421, "matched_fragments": 347, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioflavicoccus mobilis", "strain": "strain=8321", "accession": "GCA_000327045.1", "taxid": 80679, "species_taxid": 80679, "relation_to_type": "type", "validated": true, "ani": 75.0113, "matched_fragments": 73, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 75.003, "matched_fragments": 246, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurifustis variabilis", "strain": "strain=skN76", "accession": "GCA_002355415.1", "taxid": 1675686, "species_taxid": 1675686, "relation_to_type": "type", "validated": true, "ani": 74.9247, "matched_fragments": 70, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 74.7645, "matched_fragments": 171, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004300825.1", "gtdb_species": "s__Egicoccus halophilus", "ani": 77.2464, "matched_fragments": 375, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__Egicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000969705.1", "gtdb_species": "s__Nitriliruptor alkaliphilus", "ani": 76.9947, "matched_fragments": 396, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__Nitriliruptor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007123425.1", "gtdb_species": "s__SKLC01 sp007123425", "ani": 76.9805, "matched_fragments": 221, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__SKLC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007133465.1", "gtdb_species": "s__SLMP01 sp007133465", "ani": 76.8689, "matched_fragments": 259, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__SLMP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_007120465.1", "gtdb_species": "s__CSSed11-175R1 sp007120465", "ani": 76.8551, "matched_fragments": 260, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__CSSed11-175R1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007130695.1", "gtdb_species": "s__SKLC01 sp007130695", "ani": 76.8327, "matched_fragments": 260, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__SKLC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.35", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003563915.1", "gtdb_species": "s__CSSed11-175R1 sp003563915", "ani": 76.7918, "matched_fragments": 249, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__CSSed11-175R1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003558435.1", "gtdb_species": "s__PWLR01 sp003558435", "ani": 76.7379, "matched_fragments": 275, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__PWLR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007118045.1", "gtdb_species": "s__SKTG01 sp007118045", "ani": 76.6184, "matched_fragments": 260, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__SKTG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003561535.1", "gtdb_species": "s__T1Sed10-7 sp003561535", "ani": 76.5944, "matched_fragments": 240, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__T1Sed10-7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.76", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_003554005.1", "gtdb_species": "s__T1Sed10-7 sp003554005", "ani": 76.5543, "matched_fragments": 208, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__T1Sed10-7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.76", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_007117945.1", "gtdb_species": "s__T1Sed10-7 sp007117945", "ani": 76.4945, "matched_fragments": 168, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__T1Sed10-7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007125475.1", "gtdb_species": "s__SLDB01 sp007125475", "ani": 76.4277, "matched_fragments": 203, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__SLDB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007131525.1", "gtdb_species": "s__T1Sed10-7 sp007131525", "ani": 76.3674, "matched_fragments": 178, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__T1Sed10-7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.34", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007121975.1", "gtdb_species": "s__SKJO01 sp007121975", "ani": 76.3618, "matched_fragments": 205, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__SKJO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003565155.1", "gtdb_species": "s__T1Sed10-7 sp003565155", "ani": 76.3215, "matched_fragments": 221, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nitriliruptorales;f__Nitriliruptoraceae;g__T1Sed10-7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004025965.2", "gtdb_species": "s__Phycicoccus flavus", "ani": 75.474, "matched_fragments": 267, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008042275.1", "gtdb_species": "s__Streptomyces sp008042275", "ani": 75.1918, "matched_fragments": 227, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003937945.1", "gtdb_species": "s__Amycolatopsis eburnea", "ani": 75.189, "matched_fragments": 368, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115565.1", "gtdb_species": "s__Yuhushiella arida", "ani": 75.176, "matched_fragments": 270, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Yuhushiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001983105.1", "gtdb_species": "s__Frankia asymbiotica", "ani": 75.0985, "matched_fragments": 302, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862395.1", "gtdb_species": "s__Actinoplanes siamensis", "ani": 75.0544, "matched_fragments": 271, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Salsipaludibacter", "albus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }