{ "type": "genome", "identifier": "GCF_019802285.1", "organism": "Novilysobacter antarcticus", "title": "Novilysobacter antarcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019802285.1", "bioproject": "PRJNA224116", "biosample": "SAMN20394102", "wgs_master": "JAIEUJ000000000.1", "refseq_category": "reference genome", "taxid": "2862543", "species_taxid": "2862543", "organism_name": "Novilysobacter antarcticus", "infraspecific_name": "strain=GW1-59", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/30", "asm_name": "ASM1980228v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_019802285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/802/285/GCF_019802285.1_ASM1980228v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2784373", "genome_size_ungapped": "2784373", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019802285.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "2537", "protein_coding_gene_count": "2457", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-30", "dateModified": "2021-08-30", "datePublished": "2021-08-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Novilysobacter antarcticus" ], "sample_taxid": [ "2862543" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:King George Island, Fildes Peninsula" ], "sample_host_location_id": [], "data_size": "0.768 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2784373", "Number of Sequences": "6", "Longest Sequences (bp)": "1038260", "N50 (bp)": "958600", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "2506", "Average Protein Length": "340.0", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter antarcticus", "strain": "strain=GW1-59", "accession": "GCA_019802285.1", "taxid": 2862543, "species_taxid": 2862543, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 925, "total_fragments": 925, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter avium", "strain": "strain=H23M41", "accession": "GCA_015209745.1", "taxid": 2781023, "species_taxid": 2781023, "relation_to_type": "type", "validated": true, "ani": 88.9141, "matched_fragments": 832, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter ciconiae", "strain": "strain=H21R20", "accession": "GCA_015209725.1", "taxid": 2781022, "species_taxid": 2781022, "relation_to_type": "type", "validated": true, "ani": 88.4011, "matched_fragments": 804, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter concretionis", "strain": "strain=Ko07", "accession": "GCA_000768345.1", "taxid": 262325, "species_taxid": 262325, "relation_to_type": "type", "validated": true, "ani": 82.814, "matched_fragments": 623, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 81.3087, "matched_fragments": 531, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 80.8758, "matched_fragments": 520, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 80.5285, "matched_fragments": 475, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 80.5081, "matched_fragments": 488, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiicola", "strain": "strain=DSM 21749", "accession": "GCA_900167055.1", "taxid": 435289, "species_taxid": 435289, "relation_to_type": "type", "validated": true, "ani": 80.2784, "matched_fragments": 500, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 80.1682, "matched_fragments": 521, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter aestuarii", "strain": "strain=JCM 31130", "accession": "GCA_006546775.1", "taxid": 1706195, "species_taxid": 1706195, "relation_to_type": "type", "validated": true, "ani": 79.9083, "matched_fragments": 429, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter antibioticus", "strain": "strain=ATCC 29479", "accession": "GCA_001442535.1", "taxid": 84531, "species_taxid": 84531, "relation_to_type": "type", "validated": true, "ani": 79.7743, "matched_fragments": 480, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000855665.1", "gtdb_species": "s__Lysobacter sp000855665", "ani": 92.9453, "matched_fragments": 817, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015209765.1", "gtdb_species": "s__Lysobacter sp015209765", "ani": 88.8585, "matched_fragments": 824, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015209725.1", "gtdb_species": "s__Lysobacter sp015209725", "ani": 88.3998, "matched_fragments": 804, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000768345.1", "gtdb_species": "s__Lysobacter concretionis", "ani": 82.8414, "matched_fragments": 621, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000768335.1", "gtdb_species": "s__Lysobacter arseniciresistens", "ani": 81.322, "matched_fragments": 530, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_907164845.1", "gtdb_species": "s__Lysobacter sp907164845", "ani": 80.8798, "matched_fragments": 519, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003814555.1", "gtdb_species": "s__Lysobacter tengchongensis", "ani": 80.4952, "matched_fragments": 490, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900167055.1", "gtdb_species": "s__Lysobacter spongiicola", "ani": 80.294, "matched_fragments": 499, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001442535.1", "gtdb_species": "s__Lysobacter antibioticus", "ani": 79.7738, "matched_fragments": 480, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017302075.1", "gtdb_species": "s__Thermomonas sp017302075", "ani": 79.3135, "matched_fragments": 365, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003367355.1", "gtdb_species": "s__Lysobacter sp003367355", "ani": 78.6475, "matched_fragments": 344, "total_fragments": 925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Novilysobacter", "antarcticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }