{ "type": "genome", "identifier": "GCF_019823065.1", "organism": "Pseudomonas mosselii", "title": "Pseudomonas mosselii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019823065.1", "bioproject": "PRJNA224116", "biosample": "SAMN20845043", "wgs_master": "na", "refseq_category": "na", "taxid": "78327", "species_taxid": "78327", "organism_name": "Pseudomonas mosselii", "infraspecific_name": "strain=DSM 17497", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/31", "asm_name": "ASM1982306v1", "asm_submitter": "Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_019823065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/823/065/GCF_019823065.1_ASM1982306v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6346252", "genome_size_ungapped": "6346252", "gc_percent": "64.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019823065.1-RS_2024_10_12", "annotation_date": "2024-10-12", "total_gene_count": "5941", "protein_coding_gene_count": "5730", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-31", "dateModified": "2021-08-31", "datePublished": "2021-08-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas mosselii" ], "sample_taxid": [ "78327" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.749 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 30.0, "max": 30.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6346252", "Number of Sequences": "2", "Longest Sequences (bp)": "6280778", "N50 (bp)": "6280778", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.9", "Number of CDSs": "5853", "Average Protein Length": "322.7", "Coding Ratio (%)": "89.3", "Number of rRNAs": "22", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_019823065.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2110, "total_fragments": 2114, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_000621225.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 99.953, "matched_fragments": 2058, "total_fragments": 2114, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas maumuensis", "strain": "strain=COW77", "accession": "GCA_019139675.1", "taxid": 2842354, "species_taxid": 2842354, "relation_to_type": "type", "validated": true, "ani": 91.4385, "matched_fragments": 1623, "total_fragments": 2114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas soli", "strain": "strain=LMG 27941", "accession": "GCA_900110655.1", "taxid": 1306993, "species_taxid": 1306993, "relation_to_type": "type", "validated": true, "ani": 91.0545, "matched_fragments": 1636, "total_fragments": 2114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"strain=WCHPs060039", "accession": "GCA_003231305.1", "taxid": 2213015, "species_taxid": 2213015, "relation_to_type": "type", "validated": true, "ani": 88.9292, "matched_fragments": 1416, "total_fragments": 2114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas inefficax", "strain": "strain=JV551A3", "accession": "GCA_900277125.1", "taxid": 2078786, "species_taxid": 2078786, "relation_to_type": "type", "validated": true, "ani": 86.8693, "matched_fragments": 1363, "total_fragments": 2114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 86.8567, "matched_fragments": 1379, "total_fragments": 2114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", 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