{ "type": "genome", "identifier": "GCF_019890615.1", "organism": "Streptantibioticus parmotrematis", "title": "Streptantibioticus parmotrematis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chulalongkorn university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019890615.1", "bioproject": "PRJNA224116", "biosample": "SAMN20989766", "wgs_master": "JAINVZ000000000.1", "refseq_category": "reference genome", "taxid": "2873249", "species_taxid": "2873249", "organism_name": "Streptantibioticus parmotrematis", "infraspecific_name": "strain=Ptm05", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/06", "asm_name": "ASM1989061v1", "asm_submitter": "Chulalongkorn university", "gbrs_paired_asm": "GCA_019890615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/890/615/GCF_019890615.1_ASM1989061v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7401816", "genome_size_ungapped": "7401816", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019890615.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6520", "protein_coding_gene_count": "6322", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-06", "dateModified": "2021-09-06", "datePublished": "2021-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptantibioticus parmotrematis" ], "sample_taxid": [ "2873249" ], "sample_host_organism": [ "Parmotrema tinctorum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Doi Suthep-Pui National Park, Chiang Mai Province" ], "sample_host_location_id": [], "data_size": "1.980 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 13.54, "strain_heterogeneity": 20.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7401816", "Number of Sequences": "83", "Longest Sequences (bp)": "629284", "N50 (bp)": "234853", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "6589", "Average Protein Length": "327.4", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", 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