{
    "type": "genome",
    "identifier": "GCF_019890635.1",
    "organism": "Streptomyces sennicomposti",
    "title": "Streptomyces sennicomposti",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "King Mongkut's Institute of Technology Ladkrabang",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019890635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN21030501",
        "wgs_master": "JAIOAB000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2873384",
        "species_taxid": "2873384",
        "organism_name": "Streptomyces sennicomposti",
        "infraspecific_name": "strain=RCPT1-4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/06",
        "asm_name": "ASM1989063v1",
        "asm_submitter": "King Mongkut's Institute of Technology Ladkrabang",
        "gbrs_paired_asm": "GCA_019890635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/890/635/GCF_019890635.1_ASM1989063v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7351330",
        "genome_size_ungapped": "7351330",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "150",
        "contig_count": "150",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019890635.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "6331",
        "protein_coding_gene_count": "6121",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-06",
    "dateModified": "2021-09-06",
    "datePublished": "2021-09-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces sennicomposti"
        ],
        "sample_taxid": [
            "2873384"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand: Rayong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.958 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7351330",
        "Number of Sequences": "150",
        "Longest Sequences (bp)": "273479",
        "N50 (bp)": "95602",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.1",
        "Number of CDSs": "6287",
        "Average Protein Length": "329.7",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "94",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces sennicomposti",
                "strain": "strain=RCPT1-4",
                "accession": "GCA_019890635.1",
                "taxid": 2873384,
                "species_taxid": 2873384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2375,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces spiralis",
                "strain": "strain=JCM 3302",
                "accession": "GCA_014654675.1",
                "taxid": 66376,
                "species_taxid": 66376,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7323,
                "matched_fragments": 1706,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces carpinensis",
                "strain": "strain=NRRL B-16921",
                "accession": "GCA_002154505.1",
                "taxid": 66369,
                "species_taxid": 66369,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6171,
                "matched_fragments": 1518,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces naganishii",
                "strain": "strain=JCM 4654",
                "accession": "GCA_014650575.1",
                "taxid": 285447,
                "species_taxid": 285447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4604,
                "matched_fragments": 1630,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces anandii",
                "strain": "strain=JCM 4720",
                "accession": "GCA_014650655.1",
                "taxid": 285454,
                "species_taxid": 285454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3861,
                "matched_fragments": 1638,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces kebangsaanensis",
                "strain": "strain=SUK12",
                "accession": "GCA_001906585.1",
                "taxid": 864058,
                "species_taxid": 864058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1588,
                "matched_fragments": 1515,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces thermodiastaticus",
                "strain": "strain=DSM 40573",
                "accession": "GCA_021394575.1",
                "taxid": 44061,
                "species_taxid": 44061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2269,
                "matched_fragments": 1425,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseosporeus",
                "strain": "strain=JCM 4766",
                "accession": "GCA_014656055.1",
                "taxid": 1910,
                "species_taxid": 1910,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5254,
                "matched_fragments": 1605,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spinosus",
                "strain": "strain=SBTS01",
                "accession": "GCA_020400655.1",
                "taxid": 2872623,
                "species_taxid": 2872623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.357,
                "matched_fragments": 1603,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lavenduligriseus",
                "strain": "strain=NRRL ISP-5487",
                "accession": "GCA_000718625.1",
                "taxid": 67315,
                "species_taxid": 67315,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3463,
                "matched_fragments": 1555,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces viridiviolaceus",
                "strain": "strain=JCM 4855",
                "accession": "GCA_014650995.1",
                "taxid": 68282,
                "species_taxid": 68282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3046,
                "matched_fragments": 1574,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseicoloratus",
                "strain": "strain=TRM S81-3",
                "accession": "GCA_014534645.1",
                "taxid": 2752516,
                "species_taxid": 2752516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2638,
                "matched_fragments": 1564,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fumigatiscleroticus",
                "strain": "strain=JCM 3101",
                "accession": "GCA_014647975.1",
                "taxid": 66371,
                "species_taxid": 66371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2629,
                "matched_fragments": 1587,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces harenosi",
                "strain": "strain=PRKS01-65",
                "accession": "GCA_011008945.1",
                "taxid": 2697029,
                "species_taxid": 2697029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1801,
                "matched_fragments": 1336,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces puniciscabiei",
                "strain": "strain=DSM 41929",
                "accession": "GCA_006715785.1",
                "taxid": 164348,
                "species_taxid": 164348,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1243,
                "matched_fragments": 1590,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces calvus",
                "strain": "strain=CECT 3271",
                "accession": "GCA_014138735.1",
                "taxid": 67282,
                "species_taxid": 67282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9991,
                "matched_fragments": 1519,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces glaucescens",
                "strain": "strain=NRRL B-2706",
                "accession": "GCA_002154375.1",
                "taxid": 1907,
                "species_taxid": 1907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.998,
                "matched_fragments": 1289,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces leeuwenhoekii",
                "strain": "strain=C34 (= DSM 42122 = NRRL B-24963)",
                "accession": "GCA_001013905.1",
                "taxid": 1437453,
                "species_taxid": 1437453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9643,
                "matched_fragments": 1501,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces calvus",
                "strain": "strain=JCM 4326",
                "accession": "GCA_014649315.1",
                "taxid": 67282,
                "species_taxid": 67282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9409,
                "matched_fragments": 1526,
                "total_fragments": 2381,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000383935.1",
                "gtdb_species": "s__Streptomyces sp000383935",
                "ani": 98.1027,
                "matched_fragments": 2131,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013364255.1",
                "gtdb_species": "s__Streptomyces seoulensis_A",
                "ani": 92.4426,
                "matched_fragments": 1902,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001654495.1",
                "gtdb_species": "s__Streptomyces sp001654495",
                "ani": 87.8217,
                "matched_fragments": 1679,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.91",
                "min_intra_species_ani": "96.91",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000720185.1",
                "gtdb_species": "s__Streptomyces sp000720185",
                "ani": 87.7395,
                "matched_fragments": 1675,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014654675.1",
                "gtdb_species": "s__Streptomyces spiralis",
                "ani": 87.7246,
                "matched_fragments": 1707,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002154505.1",
                "gtdb_species": "s__Streptomyces carpinensis",
                "ani": 87.5928,
                "matched_fragments": 1520,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650575.1",
                "gtdb_species": "s__Streptomyces naganishii",
                "ani": 87.482,
                "matched_fragments": 1627,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650655.1",
                "gtdb_species": "s__Streptomyces anandii",
                "ani": 87.3383,
                "matched_fragments": 1644,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014647975.1",
                "gtdb_species": "s__Streptomyces fumigatiscleroticus",
                "ani": 85.3265,
                "matched_fragments": 1578,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650995.1",
                "gtdb_species": "s__Streptomyces viridiviolaceus",
                "ani": 85.3,
                "matched_fragments": 1575,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002128465.1",
                "gtdb_species": "s__Streptomyces pharetrae",
                "ani": 85.1073,
                "matched_fragments": 1393,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002237655.1",
                "gtdb_species": "s__Streptomyces sp002237655",
                "ani": 85.003,
                "matched_fragments": 1536,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000761215.1",
                "gtdb_species": "s__Streptomyces glaucescens",
                "ani": 84.9259,
                "matched_fragments": 1519,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018070565.1",
                "gtdb_species": "s__Streptomyces sp018070565",
                "ani": 84.7935,
                "matched_fragments": 1452,
                "total_fragments": 2381,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.757,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "sennicomposti"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}