{ "type": "genome", "identifier": "GCF_019890715.1", "organism": "Nocardia coffeae", "title": "Nocardia coffeae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King Mongkut's Institute of Technology Ladkrabang", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019890715.1", "bioproject": "PRJNA224116", "biosample": "SAMN21030498", "wgs_master": "JAINZY000000000.1", "refseq_category": "reference genome", "taxid": "2873381", "species_taxid": "2873381", "organism_name": "Nocardia coffeae", "infraspecific_name": "strain=CA2R105", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/06", "asm_name": "ASM1989071v1", "asm_submitter": "King Mongkut's Institute of Technology Ladkrabang", "gbrs_paired_asm": "GCA_019890715.1", "paired_asm_comp": "identical", "ftp_path": 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], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Nakhon Ratchasima" ], "sample_host_location_id": [], "data_size": "2.892 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 40.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10562586", "Number of Sequences": "106", "Longest Sequences (bp)": "2055843", "N50 (bp)": "540076", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "9521", "Average Protein Length": "325.0", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia coffeae", "strain": "strain=CA2R105", "accession": "GCA_019890715.1", "taxid": 2873381, "species_taxid": 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