{
    "type": "genome",
    "identifier": "GCF_019891175.1",
    "organism": "Leptothermofonsia sichuanensis E412",
    "title": "Leptothermofonsia sichuanensis E412",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chengdu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019891175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18435728",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2016068",
        "species_taxid": "2917832",
        "organism_name": "Leptothermofonsia sichuanensis E412",
        "infraspecific_name": "strain=E412",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/07",
        "asm_name": "ASM1989117v1",
        "asm_submitter": "Chengdu University",
        "gbrs_paired_asm": "GCA_019891175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/891/175/GCF_019891175.1_ASM1989117v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6426061",
        "genome_size_ungapped": "6426061",
        "gc_percent": "51.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019891175.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "5653",
        "protein_coding_gene_count": "5422",
        "non_coding_gene_count": "85",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-07",
    "dateModified": "2021-09-07",
    "datePublished": "2021-09-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptothermofonsia sichuanensis E412"
        ],
        "sample_taxid": [
            "2016068"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Ganzi Prefecture"
        ],
        "sample_host_location_id": [],
        "data_size": "1.814 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6426061",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "6426061",
        "N50 (bp)": "6426061",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.8",
        "Number of CDSs": "5555",
        "Average Protein Length": "312.0",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Leptothermofonsia sichuanensis",
                "strain": "strain=PKUAC-SCTE412",
                "accession": "GCA_019891175.1",
                "taxid": 2917832,
                "species_taxid": 2917832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2141,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermoleptolyngbya sichuanensis",
                "strain": "strain=PKUAC-SCTA183",
                "accession": "GCA_013177315.1",
                "taxid": 2885951,
                "species_taxid": 2885951,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2543,
                "matched_fragments": 129,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptodesmis sichuanensis",
                "strain": "strain=PKUAC-SCTA121",
                "accession": "GCA_021379005.1",
                "taxid": 2906798,
                "species_taxid": 2906798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2283,
                "matched_fragments": 226,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kovacikia minuta",
                "strain": "strain=CCNU0001",
                "accession": "GCA_020091585.1",
                "taxid": 2931930,
                "species_taxid": 2931930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7902,
                "matched_fragments": 378,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neosynechococcus sphagnicola",
                "strain": "strain=CAUP A 1101",
                "accession": "GCA_000775285.1",
                "taxid": 1501145,
                "species_taxid": 1501145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5089,
                "matched_fragments": 103,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptolyngbya boryana",
                "strain": "strain=PCC 6306",
                "accession": "GCA_000353285.1",
                "taxid": 1184,
                "species_taxid": 1184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.359,
                "matched_fragments": 63,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fischerella muscicola",
                "strain": "strain=PCC 7414",
                "accession": "GCA_000317205.1",
                "taxid": 92938,
                "species_taxid": 92938,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.104,
                "matched_fragments": 62,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc favosum",
                "strain": "strain=CHAB 5714",
                "accession": "GCA_020829495.1",
                "taxid": 2907819,
                "species_taxid": 2907819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4865,
                "matched_fragments": 50,
                "total_fragments": 2142,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001548395.1",
                "gtdb_species": "s__O-77 sp001548395",
                "ani": 77.9041,
                "matched_fragments": 156,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__O-77",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.35",
                "min_intra_species_ani": "95.35",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000309945.1",
                "gtdb_species": "s__JSC-12 sp000309945",
                "ani": 77.0934,
                "matched_fragments": 185,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__JSC-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000775285.1",
                "gtdb_species": "s__Neosynechococcus sphagnicola",
                "ani": 76.5698,
                "matched_fragments": 100,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Neosynechococcales;f__Neosynechococcaceae;g__Neosynechococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000353285.1",
                "gtdb_species": "s__Leptolyngbya boryana",
                "ani": 76.5219,
                "matched_fragments": 63,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Leptolyngbya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_016743235.1",
                "gtdb_species": "s__Pantanalinema sp016743235",
                "ani": 76.4045,
                "matched_fragments": 177,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Pantanalinema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000022045.1",
                "gtdb_species": "s__Cyanothece sp000022045",
                "ani": 76.317,
                "matched_fragments": 90,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Cyanothece",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011331465.1",
                "gtdb_species": "s__DSRU01 sp011331465",
                "ani": 76.1698,
                "matched_fragments": 136,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__DSRU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015272515.1",
                "gtdb_species": "s__JSC-12 sp015272515",
                "ani": 76.1608,
                "matched_fragments": 145,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__JSC-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003695655.1",
                "gtdb_species": "s__O-77 sp003695655",
                "ani": 76.1538,
                "matched_fragments": 87,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__O-77",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003003795.1",
                "gtdb_species": "s__Stenomitos frigidus",
                "ani": 76.1216,
                "matched_fragments": 148,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Stenomitos",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012034055.1",
                "gtdb_species": "s__JAAUSG01 sp012034055",
                "ani": 76.1213,
                "matched_fragments": 181,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__JAAUSG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003249025.1",
                "gtdb_species": "s__ULC077BIN1 sp003249025",
                "ani": 75.998,
                "matched_fragments": 124,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__ULC077BIN1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014695975.1",
                "gtdb_species": "s__Stenomitos sp014695975",
                "ani": 75.9324,
                "matched_fragments": 158,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Stenomitos",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014695955.1",
                "gtdb_species": "s__FACHB-36 sp014695955",
                "ani": 75.9134,
                "matched_fragments": 91,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__FACHB-36",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014695715.1",
                "gtdb_species": "s__FACHB-68 sp014695715",
                "ani": 75.8967,
                "matched_fragments": 68,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Oscillatoriaceae_A;g__FACHB-68",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000317045.1",
                "gtdb_species": "s__PCC-7407 sp000317045",
                "ani": 75.8366,
                "matched_fragments": 100,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-7407;f__PCC-7407;g__PCC-7407",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014849525.1",
                "gtdb_species": "s__FACHB-SPT15 sp014849525",
                "ani": 75.794,
                "matched_fragments": 67,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Coleofasciculaceae;g__FACHB-SPT15",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014380065.1",
                "gtdb_species": "s__Stenomitos sp014380065",
                "ani": 75.7915,
                "matched_fragments": 136,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Stenomitos",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010091945.1",
                "gtdb_species": "s__Myxacorys almedinensis",
                "ani": 75.7173,
                "matched_fragments": 86,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Myxacorys",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014696135.1",
                "gtdb_species": "s__Nodosilinea sp014696135",
                "ani": 75.7028,
                "matched_fragments": 64,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.07",
                "min_intra_species_ani": "95.07",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016888135.1",
                "gtdb_species": "s__RECH01 sp016888135",
                "ani": 75.6458,
                "matched_fragments": 81,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__RECH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.61",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001895925.1",
                "gtdb_species": "s__Phormidesmis_A priestleyi_A",
                "ani": 75.6009,
                "matched_fragments": 71,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Phormidesmis_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_015207365.1",
                "gtdb_species": "s__FACHB-8 sp015207365",
                "ani": 75.5015,
                "matched_fragments": 96,
                "total_fragments": 2142,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__FACHB-8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Leptothermofonsia",
        "sichuanensis",
        "E412"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}