{ "type": "genome", "identifier": "GCF_019923745.1", "organism": "Aquirufa aurantiipilula", "title": "Aquirufa aurantiipilula", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Innsbruck", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019923745.1", "bioproject": "PRJNA224116", "biosample": "SAMN13761858", "wgs_master": "JAANOG000000000.1", "refseq_category": "reference genome", "taxid": "2696561", "species_taxid": "2696561", "organism_name": "Aquirufa aurantiipilula", "infraspecific_name": "strain=15D-MOB", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/10", "asm_name": "ASM1992374v1", "asm_submitter": "University of Innsbruck", "gbrs_paired_asm": "GCA_019923745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/923/745/GCF_019923745.1_ASM1992374v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3088338", "genome_size_ungapped": "3087385", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019923745.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2680", "protein_coding_gene_count": "2617", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-10", "dateModified": "2021-09-10", "datePublished": "2021-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquirufa aurantiipilula" ], "sample_taxid": [ "2696561" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria: Mondsee" ], "sample_host_location_id": [], "data_size": "0.872 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3088338", "Number of Sequences": "70", "Longest Sequences (bp)": "442895", "N50 (bp)": "351153", "Gap Ratio (%)": "0.030858", "GCcontent (%)": "38.0", "Number of CDSs": "2566", "Average Protein Length": "359.3", "Coding Ratio (%)": "89.6", "Number of rRNAs": "6", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquirufa aurantiipilula", "strain": "strain=15D-MOB", "accession": "GCA_019923745.1", "taxid": 2696561, "species_taxid": 2696561, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1006, "total_fragments": 1007, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquirufa beregesia", "strain": "strain=50C-KIRBA", "accession": "GCA_011090385.1", "taxid": 2516556, "species_taxid": 2516556, "relation_to_type": "type", "validated": true, "ani": 86.3792, "matched_fragments": 876, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquirufa nivalisilvae", "strain": "strain=59G-WUEMPEL", "accession": "GCA_004307455.1", "taxid": 2516557, "species_taxid": 2516557, "relation_to_type": "type", "validated": true, "ani": 86.319, "matched_fragments": 859, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquirufa ecclesiirivi", "strain": "strain=50A-KIRBA", "accession": "GCA_011250515.1", "taxid": 2715124, "species_taxid": 2715124, "relation_to_type": "type", "validated": true, "ani": 86.1281, "matched_fragments": 848, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquirufa rosea", "strain": "strain=CAR-16", "accession": "GCA_004118285.1", "taxid": 2509241, "species_taxid": 2509241, "relation_to_type": "type", "validated": true, "ani": 80.6989, "matched_fragments": 668, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquirufa lenticrescens", "strain": "strain=9H-EGSE", "accession": "GCA_019916085.1", "taxid": 2696560, "species_taxid": 2696560, "relation_to_type": "type", "validated": true, "ani": 78.5108, "matched_fragments": 167, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sandaracinomonas limnophila", "strain": "strain=FSY-15", "accession": "GCA_004005965.1", "taxid": 1862386, "species_taxid": 1862386, "relation_to_type": "type", "validated": true, "ani": 77.6108, "matched_fragments": 189, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011090385.1", "gtdb_species": "s__Allopseudarcicella beregesia", "ani": 86.3783, "matched_fragments": 874, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Allopseudarcicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004307455.1", "gtdb_species": "s__Allopseudarcicella nivalisilvae", "ani": 86.3292, "matched_fragments": 860, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Allopseudarcicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011250515.1", "gtdb_species": "s__Allopseudarcicella ecclesiirivi", "ani": 86.1161, "matched_fragments": 850, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Allopseudarcicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004118285.1", "gtdb_species": "s__Allopseudarcicella rosea", "ani": 80.6895, "matched_fragments": 669, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Allopseudarcicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004307425.1", "gtdb_species": "s__Aquirufa antheringensis", "ani": 78.5055, "matched_fragments": 160, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.17", "min_intra_species_ani": "97.17", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017984215.1", "gtdb_species": "s__Aquirufa sp017984215", "ani": 77.9538, "matched_fragments": 190, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903907915.1", "gtdb_species": "s__Aquirufa sp903907915", "ani": 77.8064, "matched_fragments": 123, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004005965.1", "gtdb_species": "s__UBA6715 sp004005965", "ani": 77.5942, "matched_fragments": 190, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__UBA6715", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903907745.1", "gtdb_species": "s__Aquirufa sp903907745", "ani": 77.3641, "matched_fragments": 195, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000427405.1", "gtdb_species": "s__Flectobacillus major", "ani": 76.8622, "matched_fragments": 61, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Flectobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Aquirufa", "aurantiipilula" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }