{
    "type": "genome",
    "identifier": "GCF_019930725.1",
    "organism": "Capnocytophaga ochracea",
    "title": "Capnocytophaga ochracea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019930725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20888885",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1018",
        "species_taxid": "1018",
        "organism_name": "Capnocytophaga ochracea",
        "infraspecific_name": "strain=FDAARGOS_1468",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/12",
        "asm_name": "ASM1993072v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_019930725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/930/725/GCF_019930725.1_ASM1993072v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2615469",
        "genome_size_ungapped": "2615469",
        "gc_percent": "39.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019930725.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2252",
        "protein_coding_gene_count": "2167",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-12",
    "dateModified": "2021-09-12",
    "datePublished": "2021-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Capnocytophaga ochracea"
        ],
        "sample_taxid": [
            "1018"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.734 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2615469",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2615469",
        "N50 (bp)": "2615469",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.6",
        "Number of CDSs": "2157",
        "Average Protein Length": "347.8",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "12",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Capnocytophaga ochracea",
                "strain": "strain=FDAARGOS_1468",
                "accession": "GCA_019930725.1",
                "taxid": 1018,
                "species_taxid": 1018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 870,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Capnocytophaga ochracea",
                "strain": "strain=DSM 7271",
                "accession": "GCA_000023285.1",
                "taxid": 1018,
                "species_taxid": 1018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9997,
                "matched_fragments": 868,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga endodontalis",
                "strain": "strain=ChDC OS43",
                "accession": "GCA_002209445.1",
                "taxid": 2708117,
                "species_taxid": 2708117,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 590,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga periodontitidis",
                "strain": "strain=p1a2",
                "accession": "GCA_016126015.1",
                "taxid": 2795027,
                "species_taxid": 2795027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7811,
                "matched_fragments": 601,
                "total_fragments": 871,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga sputigena",
                "strain": "strain=NCTC11653",
                "accession": "GCA_900446695.1",
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                "species_taxid": 1019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5873,
                "matched_fragments": 586,
                "total_fragments": 871,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga leadbetteri",
                "strain": "strain=DSM 22902",
                "accession": "GCA_003054025.1",
                "taxid": 327575,
                "species_taxid": 327575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6576,
                "matched_fragments": 353,
                "total_fragments": 871,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga bilenii",
                "strain": "strain=Marseille-Q4570",
                "accession": "GCA_017565765.1",
                "taxid": 2819369,
                "species_taxid": 2819369,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.141,
                "matched_fragments": 269,
                "total_fragments": 871,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000023285.1",
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                "matched_fragments": 867,
                "total_fragments": 871,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.34",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 17,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002209445.1",
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                "matched_fragments": 590,
                "total_fragments": 871,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "96.51",
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                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_002999135.1",
                "gtdb_species": "s__Capnocytophaga sp002999135",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003054025.1",
                "gtdb_species": "s__Capnocytophaga leadbetteri",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.46",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_017565765.1",
                "gtdb_species": "s__Capnocytophaga bilenii",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.377,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "rRNA16S_genes": 4.0,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Capnocytophaga",
        "ochracea"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}