# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:1..891(+)	partial			WP_124797038.1	putative glycoside hydrolase	97.3	60.6	33.7
MGA_11	LOCUS_00110	sequence1:13281..14147(-)	partial			WP_011475884.1	DNA-processing protein DprA	71.2	71.7	53.7
MGA_16	LOCUS_00160	sequence1:17764..23280(-)	partial			WP_000682781.1	G5 domain-containing protein	20.6	11.8	37.3
MGA_33	LOCUS_00330	sequence1:42139..42915(-)	frameshift		43007	WP_100190734.1	IS3 family transposase	95.7	47.1	42.9
MGA_34	LOCUS_00340	sequence1:42951..43676(-)	partial			WP_011475832.1	IS3 family transposase	72.2	79.3	37.6
MGA_37	LOCUS_00370	sequence1:45860..46174(+)	partial			WP_139343698.1	helix-turn-helix domain-containing protein	87.5	66.9	28.6
MGA_46	LOCUS_00460	sequence1:53506..54510(-)	partial			WP_011836909.1	CPBP family intramembrane metalloprotease	65.9	66.4	30.8
MGA_70	LOCUS_00700	sequence1:80029..81663(-)	partial			WP_078232918.1	Ltp family lipoprotein	51.8	24.0	30.7
MGA_106	LOCUS_01060	sequence1:118770..119159(-)	partial			WP_003564665.1	Asp23/Gls24 family envelope stress response protein	84.5	73.9	46.0
MGA_130	LOCUS_01300	sequence1:142211..144250(-)	partial			WP_136619324.1	sugar ABC transporter substrate-binding protein	45.9	80.0	25.5
MGA_153	LOCUS_01530	sequence1:169462..171252(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	78.7	29.4	31.4
MGA_159	LOCUS_01590	sequence1:177144..179351(-)	partial			WP_011836871.1	SHIRT domain-containing protein	73.7	67.5	48.0
MGA_160	LOCUS_01600	sequence1:179556..182648(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	88.6	60.7	36.0
MGA_189	LOCUS_01890	sequence1:212666..213208(-)	partial			WP_002286745.1	dihydrolipoamide dehydrogenase	91.7	60.1	33.7
MGA_237	LOCUS_02370	sequence1:265776..266576(-)	frameshift		266629	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_238	LOCUS_02380	sequence1:266606..267160(-)	frameshift		266611	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_256	LOCUS_02560	sequence1:281663..282319(+)	partial			WP_000732627.1	DUF6287 domain-containing protein	63.3	37.4	31.0
MGA_262	LOCUS_02620	sequence1:288979..290649(+)	partial			WP_003243833.1	two-component system sensor histidine kinase YesM	49.6	46.8	26.9
MGA_263	LOCUS_02630	sequence1:290630..292168(+)	partial			WP_003641582.1	helix-turn-helix domain-containing protein	18.4	19.3	40.4
MGA_267	LOCUS_02670	sequence1:294357..295484(-)	partial			WP_002289886.1	5-formyltetrahydrofolate cyclo-ligase	37.6	76.7	36.9
MGA_296	LOCUS_02960	sequence1:329156..329710(+)	frameshift		329704	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_297	LOCUS_02970	sequence1:329740..330540(+)	frameshift		329686	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_301	LOCUS_03010	sequence1:334955..335509(+)	frameshift		335503	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_302	LOCUS_03020	sequence1:335539..336339(+)	frameshift		335485	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_310	LOCUS_03100	sequence1:343518..344687(-)	partial			WP_000238227.1	exonuclease SbcCD subunit D	78.1	73.4	36.5
MGA_314	LOCUS_03140	sequence1:348914..349144(-)	partial			WP_000940742.1	DUF1146 family protein	69.7	67.9	41.5
MGA_325	LOCUS_03250	sequence1:364583..365680(-)	partial			WP_000612272.1	competence protein CoiA family protein	83.3	74.2	25.8
MGA_367	LOCUS_03670	sequence1:407744..408235(+)	partial			WP_011459566.1	TlpA disulfide reductase family protein	85.9	70.9	30.5
MGA_394	LOCUS_03920	sequence1:439122..439496(-)	partial			WP_002355538.1	biofilm phosphatase Bph	96.8	67.8	76.7
MGA_413	LOCUS_04110	sequence1:462293..463345(+)	partial			WP_002681016.1	histidine kinase	63.7	61.9	38.0
MGA_425	LOCUS_04230	sequence1:475854..477482(-)	partial			WP_004190216.1	Cna B-type domain-containing protein	74.2	66.5	41.2
MGA_432	LOCUS_04300	sequence1:486291..491681(-)	partial			WP_000489015.1	YSIRK signal domain/LPXTG anchor domain surface protein	26.4	52.5	34.0
MGA_442	LOCUS_04400	sequence1:499550..500350(-)	frameshift		500403	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_443	LOCUS_04410	sequence1:500380..500934(-)	frameshift		500385	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_448	LOCUS_04460	sequence1:504063..504386(+)	partial			WP_000349604.1	GIY-YIG nuclease family protein	70.1	76.5	58.7
MGA_461	LOCUS_04590	sequence1:515599..516948(-)	partial			WP_015776381.1	N-acetylglucosamine/diacetylchitobiose ABC transporter substrate-binding protein	76.2	69.8	24.6
MGA_500	LOCUS_04980	sequence1:556688..556813(+)	internal_stop_codon	556589..556591(+)		WP_012775654.1	site-specific integrase	97.6	10.5	65.0
MGA_506	LOCUS_05040	sequence1:564856..565500(-)	partial			WP_011104332.1	MmcQ/YjbR family DNA-binding protein	31.8	58.1	38.2
MGA_532	LOCUS_05300	sequence1:591582..591881(-)	partial			WP_002359714.1	YlbG family protein	74.7	63.8	50.0
MGA_539	LOCUS_05370	sequence1:600690..601469(-)	partial			WP_003231267.1	3D domain-containing protein	78.4	72.5	36.4
MGA_543	LOCUS_05410	sequence1:605854..606738(-)	partial			WP_003567269.1	ABC transporter ATP-binding protein	69.7	71.9	41.9
MGA_553	LOCUS_05510	sequence1:618550..619029(-)	frameshift		619024	WP_002356508.1	ABC transporter ATP-binding protein	96.2	42.4	79.1
MGA_554	LOCUS_05520	sequence1:619022..619651(-)	frameshift		619024	WP_002356508.1	ABC transporter ATP-binding protein	97.1	56.2	74.4
MGA_651	LOCUS_06490	sequence1:697622..698635(-)	partial			WP_002985324.1	DNase Mf2	59.6	78.6	55.2
MGA_652	LOCUS_06500	sequence1:698841..703931(-)	partial			WP_000515824.1	beta-N-acetylglucosaminidase domain-containing protein	80.4	49.1	61.4
MGA_666	LOCUS_06640	sequence1:713279..713884(-)	partial			WP_010975245.1	TetR/AcrR family transcriptional regulator	76.6	69.6	33.8
MGA_706	LOCUS_07040	sequence1:749170..749340(-)	partial			WP_000031832.1	recombinase family protein	85.7	8.6	72.9
MGA_708	LOCUS_07060	sequence1:750620..750784(+)	partial			WP_000301254.1	recombinase family protein	94.4	9.8	58.8
MGA_713	LOCUS_07110	sequence1:754524..755906(-)	partial			WP_015039059.1	nucleotidyltransferase	71.3	71.6	29.0
MGA_750	LOCUS_07480	sequence1:792247..792477(-)	internal_stop_codon	792478..792480(-)		WP_000687513.1	GntR family transcriptional regulator	98.7	59.5	40.0
MGA_752	LOCUS_07500	sequence1:792756..794087(-)	partial			WP_003700513.1	acyltransferase family protein	98.4	72.3	30.2
MGA_778	LOCUS_07760	sequence1:818493..818654(-)	frameshift		818536,818671	WP_128834060.1	IS3-like element ISSmu1 family transposase	73.6	8.7	59.0
MGA_779	LOCUS_07770	sequence1:818663..818914(-)	frameshift,internal_stop_codon	818960..818962(-)	818536,818674	WP_211260004.1	IS3 family transposase	90.4	16.5	61.3
MGA_780	LOCUS_07780	sequence1:818960..819298(-)	internal_stop_codon	818960..818962(-)		WP_002263573.1	IS3 family transposase	100.0	40.3	51.3
MGA_838	LOCUS_08340	sequence1:878307..878813(-)	partial			WP_011038290.1	isoprenylcysteine carboxylmethyltransferase family protein	52.4	52.4	37.5
MGA_860	LOCUS_08560	sequence1:900254..900844(-)	partial			WP_011229253.1	TetR/AcrR family transcriptional regulator	71.9	72.3	26.0
MGA_873	LOCUS_08690	sequence1:911490..912470(-)	partial			WP_000350519.1	N-acetylmuramoyl-L-alanine amidase family protein	53.7	56.9	49.2
MGA_878	LOCUS_08740	sequence1:915486..917567(-)	partial			WP_011674637.1	collagen-like protein	52.4	29.2	28.1
MGA_888	LOCUS_08840	sequence1:923972..924808(-)	frameshift		924837	WP_010905714.1	phage major capsid protein	98.6	69.5	46.4
MGA_921	LOCUS_09170	sequence1:940176..940619(+)	partial			WP_000090697.1	S24 family peptidase	87.1	50.0	51.1
MGA_952	LOCUS_09480	sequence1:978781..979476(+)	frameshift		978607	WP_100190734.1	IS3 family transposase	95.2	42.0	41.4
MGA_964	LOCUS_09580	sequence1:992837..994075(+)	partial			WP_002900707.1	Ig-like domain-containing protein	50.0	36.7	28.9
MGA_966	LOCUS_09600	sequence1:994948..995598(+)	partial			WP_002468207.1	type II CAAX endopeptidase family protein	53.7	46.4	37.0
MGA_972	LOCUS_09660	sequence1:1001439..1002215(-)	frameshift		1002307	WP_100190734.1	IS3 family transposase	95.7	47.1	42.9
MGA_973	LOCUS_09670	sequence1:1002251..1002976(-)	partial			WP_011475832.1	IS3 family transposase	72.2	79.3	37.6
MGA_975	LOCUS_09690	sequence1:1003942..1004220(+)	partial			WP_002287745.1	thioredoxin family protein	82.6	65.0	51.3
MGA_980	LOCUS_09740	sequence1:1009602..1010729(-)	partial			WP_193905664.1	GTP-binding protein	54.4	61.8	41.2
MGA_992	LOCUS_09860	sequence1:1025563..1026858(+)	partial			WP_002378718.1	glucosaminidase domain-containing protein	28.8	24.5	50.0
MGA_999	LOCUS_09930	sequence1:1032273..1033595(+)	partial			WP_164929927.1	alpha-L-fucosidase	88.9	69.6	42.0
MGA_1000	LOCUS_09940	sequence1:1033627..1036317(+)	partial			WP_003406189.1	DEAD/DEAH box helicase family protein	63.7	62.8	27.1
MGA_1012	LOCUS_10060	sequence1:1048425..1049495(+)	partial			WP_003020323.1	DUF2971 domain-containing protein	52.5	74.4	24.8
MGA_1035	LOCUS_10290	sequence1:1074800..1075129(+)	partial			WP_010964944.1	DUF4176 domain-containing protein	77.1	62.5	57.1
MGA_1041	LOCUS_10350	sequence1:1078684..1079097(+)	partial			WP_001233826.1	hypothetical protein	74.5	67.8	40.8
MGA_1121	LOCUS_11150	sequence1:1144748..1145458(+)	partial			WP_011836379.1	membrane protein	83.5	45.7	34.2
MGA_1125	LOCUS_11190	sequence1:1148963..1149733(-)	partial			WP_012775056.1	LD-carboxypeptidase LdcB/DacB	73.0	73.7	53.2
MGA_1155	LOCUS_11490	sequence1:1176242..1176622(+)	frameshift		1176592	WP_011860793.1	relaxase/mobilization nuclease domain-containing protein	96.0	27.3	47.1
MGA_1156	LOCUS_11500	sequence1:1176815..1177048(+)	partial			WP_000103844.1	CopY/TcrY family copper transport repressor	79.2	41.2	91.8
MGA_1159	LOCUS_11530	sequence1:1179154..1179624(+)	frameshift		1179576	WP_105158881.1	replication initiator protein A	74.4	41.9	59.5
MGA_1165	LOCUS_11590	sequence1:1187259..1187477(-)	frameshift		1187583	WP_115283723.1	IS3 family transposase	100.0	16.0	88.9
MGA_1166	LOCUS_11600	sequence1:1187581..1188093(-)	frameshift		1187585,1188155	WP_120719018.1	IS3 family transposase	100.0	37.9	77.6
MGA_1167	LOCUS_11610	sequence1:1188093..1188497(-)	frameshift		1188167	WP_140860145.1	IS3 family transposase	82.1	24.5	81.8
MGA_1169	LOCUS_11630	sequence1:1188882..1189073(+)	partial			WP_002665927.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	96.8	67.8	49.2
MGA_1172	LOCUS_11660	sequence1:1190497..1191012(-)	frameshift		1190571	WP_140860145.1	IS3 family transposase	86.0	32.7	74.8
MGA_1198	LOCUS_11920	sequence1:1217475..1218200(+)	partial			WP_011475832.1	IS3 family transposase	72.2	79.3	37.6
MGA_1199	LOCUS_11930	sequence1:1218236..1219012(+)	frameshift		1218143	WP_100190734.1	IS3 family transposase	95.7	47.1	42.9
MGA_1201	LOCUS_11950	sequence1:1219533..1220081(-)	partial			WP_011836587.1	EndoU domain-containing protein	68.7	21.4	78.4
MGA_1223	LOCUS_12170	sequence1:1242772..1243287(+)	frameshift		1243212	WP_140860145.1	IS3 family transposase	86.0	32.7	74.8
MGA_1261	LOCUS_12550	sequence1:1283749..1284192(+)	partial			WP_003722746.1	septum formation initiator family protein	63.9	75.0	34.4
MGA_1283	LOCUS_12770	sequence1:1306499..1306903(-)	frameshift,internal_stop_codon	1306964..1306966(-)	1306573	WP_140860145.1	IS3 family transposase	82.1	24.5	78.2
MGA_1286	LOCUS_12800	sequence1:1309930..1311828(+)	partial			WP_000214765.1	AAA family ATPase	46.5	30.9	52.4
MGA_1295	LOCUS_12890	sequence1:1321394..1321930(+)	partial			WP_003727691.1	FMN-binding protein	91.0	53.2	41.7
MGA_1311	LOCUS_13030	sequence1:1341610..1343835(+)	partial			WP_000672596.1	pneumococcal histidine triad protein PhtE	89.9	58.8	44.1
MGA_1325	LOCUS_13170	sequence1:1358979..1359221(+)	frameshift		1358923,1358758	WP_023916573.1	CPBP family intramembrane metalloprotease	97.5	31.1	76.9
MGA_1326	LOCUS_13180	sequence1:1359282..1360082(-)	frameshift		1360135	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_1327	LOCUS_13190	sequence1:1360112..1360666(-)	frameshift		1360117	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_1334	LOCUS_13260	sequence1:1364703..1365128(+)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	43.7
MGA_1335	LOCUS_13270	sequence1:1365154..1365579(+)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	39.8
MGA_1336	LOCUS_13280	sequence1:1365608..1366033(+)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	40.8
MGA_1338	LOCUS_13300	sequence1:1366512..1366940(+)	partial			WP_001233826.1	hypothetical protein	66.2	62.5	38.9
MGA_1340	LOCUS_13320	sequence1:1367403..1367846(+)	partial			WP_001233826.1	hypothetical protein	63.9	62.5	36.8
MGA_1341	LOCUS_13330	sequence1:1367872..1368219(+)	frameshift		1368213	WP_001233826.1	hypothetical protein	66.1	50.7	41.6
MGA_1342	LOCUS_13340	sequence1:1368329..1368754(+)	frameshift		1368213	WP_001233826.1	hypothetical protein	73.0	68.4	43.3
MGA_1343	LOCUS_13350	sequence1:1368768..1369193(+)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	45.6
MGA_1344	LOCUS_13360	sequence1:1369245..1369670(+)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	35.0
MGA_1346	LOCUS_13380	sequence1:1370274..1370537(+)	partial			WP_001233826.1	hypothetical protein	97.7	56.6	38.4
MGA_1358	LOCUS_13500	sequence1:1380047..1383148(+)	partial			WP_011837269.1	SpaA isopeptide-forming pilin-related protein	97.4	66.0	60.8
MGA_1383	LOCUS_13750	sequence1:1406111..1406806(+)	frameshift		1405937	WP_100190734.1	IS3 family transposase	95.2	42.0	41.4
MGA_1390	LOCUS_13820	sequence1:1411596..1412474(-)	partial			WP_003131689.1	cation diffusion facilitator family transporter	98.6	67.8	46.5
MGA_1406	LOCUS_13980	sequence1:1427583..1427954(+)	partial			WP_002895529.1	PTS lactose/cellobiose transporter subunit IIA	67.5	75.5	38.6
MGA_1428	LOCUS_14200	sequence1:1446330..1446974(+)	partial			WP_000934381.1	TIGR01906 family membrane protein	71.0	76.8	44.1
MGA_1430	LOCUS_14220	sequence1:1448053..1450680(+)	partial			WP_002279588.1	YfhO family protein	46.1	41.7	49.1
MGA_1462	LOCUS_14540	sequence1:1484109..1485458(+)	partial			WP_002295400.1	LCP family protein	65.9	73.8	42.2
MGA_1463	LOCUS_14550	sequence1:1485480..1486520(+)	partial			WP_002387690.1	LCP family protein	88.4	74.6	44.0
MGA_1473	LOCUS_14650	sequence1:1495620..1496810(+)	partial			WP_000753855.1	choline-binding protein PcpA	60.1	31.6	43.7
MGA_1474	LOCUS_14660	sequence1:1496952..1497113(+)	frameshift		1497086	WP_011475802.1	response regulator transcription factor	75.5	17.5	80.0
MGA_1475	LOCUS_14670	sequence1:1497119..1497646(+)	frameshift		1497086	WP_002290973.1	response regulator transcription factor	100.0	76.8	68.6
MGA_1495	LOCUS_14870	sequence1:1522361..1524487(+)	partial			WP_000672613.1	pneumococcal-type histidine triad protein	79.8	43.3	24.9
MGA_1498	LOCUS_14900	sequence1:1526651..1527007(+)	partial			WP_003564013.1	cell division protein ZapA	55.9	81.5	43.9
MGA_1510	LOCUS_15020	sequence1:1536777..1537211(+)	partial			WP_002381831.1	YtxH domain-containing protein	100.0	71.8	35.4
MGA_1557	LOCUS_15490	sequence1:1576799..1576948(+)	internal_stop_codon	1576946..1576948(+)		WP_011460706.1	transcriptional repressor	75.5	25.7	67.6
MGA_1558	LOCUS_15500	sequence1:1576964..1577233(+)	internal_stop_codon	1576946..1576948(+)		WP_003223285.1	peroxide-responsive transcriptional repressor PerR	98.9	60.7	59.1
MGA_1592	LOCUS_15840	sequence1:1616632..1617081(+)	partial			WP_003245781.1	PTS mannose transporter subunit IIABC	99.3	22.9	41.6
MGA_1594	LOCUS_15860	sequence1:1617440..1618492(+)	frameshift,internal_stop_codon	1617412..1617414(+)	1617444	WP_003245781.1	PTS mannose transporter subunit IIABC	98.6	53.2	41.4
MGA_1639	LOCUS_16290	sequence1:1665390..1666124(+)	partial			WP_011017006.1	sugar phosphate nucleotidyltransferase	94.7	42.9	39.7
MGA_1647	LOCUS_16370	sequence1:1675079..1681789(+)	partial			WP_011836784.1	CshA/CshB family fibrillar adhesin-related protein	97.7	68.3	37.5
MGA_1655	LOCUS_16450	sequence1:1688126..1688704(-)	partial			WP_205010568.1	tyrosine-type recombinase/integrase	60.9	28.9	64.1
MGA_1656	LOCUS_16460	sequence1:1688701..1688850(-)	frameshift		1688714,1688861	WP_093649644.1	ISL3 family transposase	91.8	7.1	75.6
MGA_1663	LOCUS_16530	sequence1:1694251..1698291(+)	partial			WP_002352221.1	cell surface antigen I/II	47.0	41.0	69.2
MGA_1689	LOCUS_16790	sequence1:1724585..1726252(-)	partial			WP_120171861.1	GBS Bsp-like repeat-containing protein	34.6	17.8	45.6
MGA_1690	LOCUS_16800	sequence1:1726412..1727320(-)	internal_stop_codon	1727480..1727482(-)		WP_001042503.1	N-acetylmuramoyl-L-alanine amidase family protein	55.3	55.9	39.9
MGA_1691	LOCUS_16810	sequence1:1727480..1728505(-)	partial			WP_012972567.1	choline binding-anchored murein hydrolase LytC	49.6	31.9	42.1
MGA_1733	LOCUS_17230	sequence1:1773256..1774638(+)	frameshift		1774545	WP_000966715.1	beta-glucuronidase	93.5	71.1	56.5
MGA_1734	LOCUS_17240	sequence1:1774547..1775059(+)	frameshift		1774545	WP_000966715.1	beta-glucuronidase	99.4	28.0	66.3
MGA_1741	LOCUS_17310	sequence1:1781102..1781809(+)	partial			WP_010965264.1	alpha/beta hydrolase	72.3	69.4	28.8
MGA_1742	LOCUS_17320	sequence1:1782365..1782808(-)	frameshift		1782816	WP_001178657.1	threonine/serine exporter family protein	89.1	32.0	34.1
MGA_1750	LOCUS_17400	sequence1:1789719..1789976(+)	partial			WP_099835063.1	IS3 family transposase	64.7	14.5	50.9
MGA_1789	LOCUS_17790	sequence1:1832959..1834536(+)	partial			WP_011837269.1	SpaA isopeptide-forming pilin-related protein	73.7	25.7	37.1
MGA_1825	LOCUS_18150	sequence1:1871244..1872044(-)	frameshift		1872097	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_1826	LOCUS_18160	sequence1:1872074..1872628(-)	frameshift		1872079	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_1828	LOCUS_18180	sequence1:1875664..1876068(+)	partial			WP_002358896.1	metal-dependent transcriptional regulator	97.0	58.6	52.3
MGA_1904	LOCUS_18940	sequence1:1960897..1961412(+)	frameshift		1961337	WP_140860145.1	IS3 family transposase	86.0	32.7	75.5
MGA_1905	LOCUS_18950	sequence1:1961637..1962245(+)	partial			WP_002263573.1	IS3 family transposase	99.5	72.3	84.6
