{ "type": "genome", "identifier": "GCF_019931215.1", "organism": "Alcanivorax limicola", "title": "Alcanivorax limicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019931215.1", "bioproject": "PRJNA224116", "biosample": "SAMN21194557", "wgs_master": "JAIOUB000000000.1", "refseq_category": "reference genome", "taxid": "2874102", "species_taxid": "2874102", "organism_name": "Alcanivorax limicola", "infraspecific_name": "strain=JB21", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/12", "asm_name": "ASM1993121v1", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_019931215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/931/215/GCF_019931215.1_ASM1993121v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3552727", "genome_size_ungapped": "3552707", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019931215.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3204", "protein_coding_gene_count": "3147", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-12", "dateModified": "2021-09-12", "datePublished": "2021-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax limicola" ], "sample_taxid": [ "2874102" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Heilongjiang" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3552727", "Number of Sequences": "11", "Longest Sequences (bp)": "1369417", "N50 (bp)": "912701", "Gap Ratio (%)": "0.000563", "GCcontent (%)": "61.3", "Number of CDSs": "3169", "Average Protein Length": "338.5", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1178, "total_fragments": 1179, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alcanivorax indicus", "strain": "strain=SW127", "accession": "GCA_003259185.1", "taxid": 2202653, "species_taxid": 2202653, "relation_to_type": "type", "validated": true, "ani": 82.0455, "matched_fragments": 760, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax pacificus", "strain": "strain=W11-5", "accession": "GCA_000299335.2", "taxid": 1306787, "species_taxid": 1306787, "relation_to_type": "type", "validated": true, "ani": 79.3551, "matched_fragments": 499, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 78.0655, "matched_fragments": 301, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 78.0331, "matched_fragments": 323, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 77.9198, "matched_fragments": 211, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax xenomutans", "strain": "strain=JC109", "accession": "GCA_900217905.1", "taxid": 1094342, "species_taxid": 1094342, "relation_to_type": "type", "validated": true, "ani": 77.8492, "matched_fragments": 254, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 77.7951, "matched_fragments": 314, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax mobilis", "strain": "strain=MT13131", "accession": "GCA_002864685.1", "taxid": 2019569, "species_taxid": 2019569, "relation_to_type": "type", "validated": true, "ani": 77.7905, "matched_fragments": 275, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 77.7894, "matched_fragments": 269, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax dieselolei", "strain": "strain=CGMCC 1.3690", "accession": "GCA_014644575.1", "taxid": 285091, "species_taxid": 285091, "relation_to_type": "type", "validated": true, "ani": 77.6466, "matched_fragments": 248, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 77.6025, "matched_fragments": 251, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.5768, "matched_fragments": 135, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.5643, "matched_fragments": 128, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 76.4862, "matched_fragments": 120, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003259185.1", "gtdb_species": "s__Alcanivorax_A indicus", "ani": 82.0313, "matched_fragments": 762, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013823245.1", "gtdb_species": "s__Alcanivorax_A sp013823245", "ani": 80.5771, "matched_fragments": 616, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000299335.2", "gtdb_species": "s__Alcanivorax_A pacificus", "ani": 79.3647, "matched_fragments": 498, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009846755.1", "gtdb_species": "s__Alcanivorax_A sp009846755", "ani": 79.2711, "matched_fragments": 469, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003862375.1", "gtdb_species": "s__Alcanivorax jadensis_A", "ani": 78.1015, "matched_fragments": 274, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.67", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000300995.1", "gtdb_species": "s__Alcanivorax hongdengensis", "ani": 78.0964, "matched_fragments": 293, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005938655.1", "gtdb_species": "s__Alcanivorax gelatiniphagus", "ani": 78.0655, "matched_fragments": 301, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015265435.1", "gtdb_species": "s__Alcanivorax profundimaris", "ani": 78.0445, "matched_fragments": 322, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.49", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.77", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_003597125.1", "gtdb_species": "s__Alcanivorax profundi", "ani": 77.9032, "matched_fragments": 212, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900107995.1", "gtdb_species": 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