{ "type": "genome", "identifier": "GCF_019933235.1", "organism": "Streptomyces angustmyceticus", "title": "Streptomyces angustmyceticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wuhan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019933235.1", "bioproject": "PRJNA224116", "biosample": "SAMN21169134", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "285578", "species_taxid": "285578", "organism_name": "Streptomyces angustmyceticus", "infraspecific_name": "strain=JCM 4053", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/13", "asm_name": "ASM1993323v1", "asm_submitter": "Wuhan University", "gbrs_paired_asm": "GCA_019933235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/933/235/GCF_019933235.1_ASM1993323v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8116382", "genome_size_ungapped": "8116382", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019933235.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "7113", "protein_coding_gene_count": "6882", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-13", "dateModified": "2021-09-13", "datePublished": "2021-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces angustmyceticus" ], "sample_taxid": [ "285578" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "2.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8116382", "Number of Sequences": "1", "Longest Sequences (bp)": "8116382", "N50 (bp)": "8116382", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.2", "Number of CDSs": "7212", "Average Protein Length": "324.2", "Coding Ratio (%)": "86.4", "Number of rRNAs": "21", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=JCM 4053", "accession": "GCA_019933235.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2703, "total_fragments": 2705, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NBRC 3934", "accession": "GCA_009176265.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 99.9785, "matched_fragments": 2666, "total_fragments": 2705, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NRRL B-2347", "accession": "GCA_002154415.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 99.6746, "matched_fragments": 2036, "total_fragments": 2705, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces caniferus", "strain": "strain=NBRC 15389", "accession": "GCA_009811555.1", "taxid": 285557, "species_taxid": 285557, "relation_to_type": "type", "validated": true, "ani": 92.6092, "matched_fragments": 2302, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_001270575.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 90.872, "matched_fragments": 2085, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces libani subsp. libani", "strain": "strain=JCM 4322", "accession": "GCA_014649275.1", "taxid": 68044, "species_taxid": 68043, "relation_to_type": "type", "validated": true, "ani": 89.8208, "matched_fragments": 2141, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces libani subsp. libani", "strain": "strain=NBRC 13452", "accession": "GCA_009811595.1", "taxid": 68044, "species_taxid": 68043, "relation_to_type": "type", "validated": true, "ani": 89.7968, "matched_fragments": 2166, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces 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92743, "species_taxid": 92743, "relation_to_type": "type", "validated": true, "ani": 84.0506, "matched_fragments": 1653, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 84.0409, "matched_fragments": 1611, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 83.9424, "matched_fragments": 1692, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neomegalonema perideroedes", "strain": "strain=DSM 15528", "accession": "GCA_000374145.1", "taxid": 217219, "species_taxid": 217219, "relation_to_type": "type", "validated": true, "ani": 74.7941, "matched_fragments": 119, "total_fragments": 2705, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009176265.1", "gtdb_species": "s__Streptomyces angustmyceticus", "ani": 99.9785, "matched_fragments": 2666, "total_fragments": 2705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_009811555.1", "gtdb_species": "s__Streptomyces caniferus", "ani": 92.6195, "matched_fragments": 2299, "total_fragments": 2705, "gtdb_taxonomy": 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