{
    "type": "genome",
    "identifier": "GCF_019947135.1",
    "organism": "Occultella gossypii",
    "title": "Occultella gossypii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Normal University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019947135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18780202",
        "wgs_master": "JAGSHT000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2800820",
        "species_taxid": "2800820",
        "organism_name": "Occultella gossypii",
        "infraspecific_name": "strain=N2-46",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/13",
        "asm_name": "ASM1994713v1",
        "asm_submitter": "Nanjing Normal University",
        "gbrs_paired_asm": "GCA_019947135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/947/135/GCF_019947135.1_ASM1994713v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5844339",
        "genome_size_ungapped": "5844339",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019947135.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "5357",
        "protein_coding_gene_count": "5247",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-13",
    "dateModified": "2021-09-13",
    "datePublished": "2021-09-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Occultella gossypii"
        ],
        "sample_taxid": [
            "2800820"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Hainan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.569 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 12.5,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5844339",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "520472",
        "N50 (bp)": "243671",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.8",
        "Number of CDSs": "5333",
        "Average Protein Length": "335.5",
        "Coding Ratio (%)": "91.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Occultella gossypii",
                "strain": "strain=N2-46",
                "accession": "GCA_019947135.1",
                "taxid": 2800820,
                "species_taxid": 2800820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1926,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Occultella kanbiaonis",
                "strain": "strain=HY164",
                "accession": "GCA_009708215.1",
                "taxid": 2675754,
                "species_taxid": 2675754,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9874,
                "matched_fragments": 1557,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella aeris",
                "strain": "strain=CIP 111667",
                "accession": "GCA_902703175.1",
                "taxid": 2761496,
                "species_taxid": 2761496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.7197,
                "matched_fragments": 1545,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella glacieicola",
                "strain": "strain=T3246-1",
                "accession": "GCA_004353825.1",
                "taxid": 2518684,
                "species_taxid": 2518684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7207,
                "matched_fragments": 1438,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania albidiflava",
                "strain": "strain=DSM 18029",
                "accession": "GCA_000421225.1",
                "taxid": 366586,
                "species_taxid": 366586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2246,
                "matched_fragments": 618,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania suaedae",
                "strain": "strain=LR1S40",
                "accession": "GCA_021049265.1",
                "taxid": 2897774,
                "species_taxid": 2897774,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.04,
                "matched_fragments": 579,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania rhizosphaerae",
                "strain": "strain=LNNU 22110",
                "accession": "GCA_009805705.1",
                "taxid": 1840413,
                "species_taxid": 1840413,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4972,
                "matched_fragments": 527,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas biazotea",
                "strain": "strain=NBRC12680",
                "accession": "GCA_004306155.1",
                "taxid": 1709,
                "species_taxid": 1709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6127,
                "matched_fragments": 391,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6005,
                "matched_fragments": 487,
                "total_fragments": 1930,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 12.5,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009708215.1",
                "gtdb_species": "s__Occultella sp009708215",
                "ani": 91.988,
                "matched_fragments": 1557,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "97.28",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902703175.1",
                "gtdb_species": "s__Occultella aeris",
                "ani": 91.7473,
                "matched_fragments": 1542,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004353825.1",
                "gtdb_species": "s__Occultella glacieicola",
                "ani": 86.714,
                "matched_fragments": 1439,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016649925.1",
                "gtdb_species": "s__JAENWO01 sp016649925",
                "ani": 79.8092,
                "matched_fragments": 414,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__JAENWO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000421225.1",
                "gtdb_species": "s__Ruania albidiflava",
                "ani": 79.2248,
                "matched_fragments": 618,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009733815.1",
                "gtdb_species": "s__Pseudactinotalea suaedae",
                "ani": 78.7808,
                "matched_fragments": 620,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008000995.1",
                "gtdb_species": "s__Ruania sp008000995",
                "ani": 78.7713,
                "matched_fragments": 652,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019116305.1",
                "gtdb_species": "s__Ruania gallistercoris",
                "ani": 78.7427,
                "matched_fragments": 546,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Ruania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009733795.1",
                "gtdb_species": "s__Pseudactinotalea caeni",
                "ani": 78.6153,
                "matched_fragments": 620,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009805705.1",
                "gtdb_species": "s__Haloactinobacterium sp009805705",
                "ani": 78.5273,
                "matched_fragments": 523,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Haloactinobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009733845.1",
                "gtdb_species": "s__Pseudactinotalea terrae",
                "ani": 78.4783,
                "matched_fragments": 618,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009660225.1",
                "gtdb_species": "s__HY158 sp009660225",
                "ani": 78.1009,
                "matched_fragments": 418,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__HY158",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006352065.1",
                "gtdb_species": "s__Georgenia sp006352065",
                "ani": 77.6136,
                "matched_fragments": 485,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.59",
                "min_intra_species_ani": "95.59",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004306155.1",
                "gtdb_species": "s__Cellulomonas biazotea",
                "ani": 77.5925,
                "matched_fragments": 393,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009193135.1",
                "gtdb_species": "s__Oceanitalea satyanarayanai",
                "ani": 77.4207,
                "matched_fragments": 430,
                "total_fragments": 1930,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Oceanitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Occultella",
        "gossypii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}