{ "type": "genome", "identifier": "GCF_019966495.1", "organism": "Tateyamaria pelophila", "title": "Tateyamaria pelophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019966495.1", "bioproject": "PRJNA224116", "biosample": "SAMN20953795", "wgs_master": "JAIMIA000000000.1", "refseq_category": "reference genome", "taxid": "328415", "species_taxid": "328415", "organism_name": "Tateyamaria pelophila", "infraspecific_name": "strain=DSM 17270", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/14", "asm_name": "ASM1996649v1", "asm_submitter": "Second Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_019966495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/966/495/GCF_019966495.1_ASM1996649v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5649492", "genome_size_ungapped": "5648394", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "280", "contig_count": "280", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019966495.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "5540", "protein_coding_gene_count": "5312", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-14", "dateModified": "2021-09-14", "datePublished": "2021-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Tateyamaria pelophila" ], "sample_taxid": [ "328415" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea: coast" ], "sample_host_location_id": [], "data_size": "1.614 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5649492", "Number of Sequences": "280", "Longest Sequences (bp)": "195967", "N50 (bp)": "40287", "Gap Ratio (%)": "0.019435", "GCcontent (%)": "58.3", "Number of CDSs": "5445", "Average Protein Length": "296.4", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tateyamaria pelophila", "strain": "strain=DSM 17270", "accession": "GCA_019966495.1", "taxid": 328415, "species_taxid": 328415, 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"validated": true, "ani": 78.0113, "matched_fragments": 403, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria mediterranea", "strain": "strain=CECT 7615", "accession": "GCA_900302455.1", "taxid": 1280832, "species_taxid": 1280832, "relation_to_type": "type", "validated": true, "ani": 77.7204, "matched_fragments": 271, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sabulilitoris", "strain": "strain=HSMS-29", "accession": "GCA_005887615.1", "taxid": 2562655, "species_taxid": 2562655, "relation_to_type": "type", "validated": true, "ani": 77.6732, "matched_fragments": 378, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria litorea", "strain": "strain=CECT 7639", "accession": "GCA_900172225.1", "taxid": 1280831, "species_taxid": 1280831, "relation_to_type": "type", "validated": true, "ani": 77.5111, "matched_fragments": 245, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter cerasinus", "strain": "strain=AI77", "accession": "GCA_009811755.1", "taxid": 2602289, "species_taxid": 2602289, "relation_to_type": "type", "validated": true, "ani": 77.418, "matched_fragments": 333, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter pontiacus", "strain": "strain=DSM 10014", "accession": "GCA_900106935.1", "taxid": 60137, "species_taxid": 60137, "relation_to_type": "type", "validated": true, "ani": 77.4013, "matched_fragments": 297, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.228, "matched_fragments": 281, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.2248, "matched_fragments": 281, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliishimia ponticola", "strain": "strain=MYP11", "accession": "GCA_004803475.1", "taxid": 2499833, "species_taxid": 2499833, "relation_to_type": "type", "validated": true, "ani": 77.2222, "matched_fragments": 298, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooctadecabacter jejudonensis", "strain": "strain=CECT 8397", "accession": "GCA_900172275.1", "taxid": 1391910, "species_taxid": 1391910, "relation_to_type": "type", "validated": true, "ani": 77.2045, "matched_fragments": 176, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquimarina", "strain": "strain=DSM 24565", "accession": "GCA_000473165.1", "taxid": 476529, "species_taxid": 476529, "relation_to_type": "type", "validated": true, "ani": 77.1153, "matched_fragments": 253, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter marinintestinus", "strain": "strain=UB-M7", "accession": "GCA_007923355.1", "taxid": 1492905, "species_taxid": 1492905, "relation_to_type": "type", "validated": true, "ani": 77.0796, "matched_fragments": 276, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=NB-77", "accession": "GCA_000622385.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 77.0492, "matched_fragments": 241, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga dicentrarchi", "strain": "strain=YLY04", "accession": "GCA_003316635.1", "taxid": 2250573, "species_taxid": 2250573, "relation_to_type": "type", "validated": true, "ani": 77.0309, "matched_fragments": 234, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.9474, "matched_fragments": 242, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 76.9465, "matched_fragments": 176, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola algae", "strain": "strain=Lw-13e", "accession": "GCA_003590145.2", "taxid": 1537215, "species_taxid": 1537215, "relation_to_type": "type", "validated": true, "ani": 76.9152, "matched_fragments": 203, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.8612, "matched_fragments": 198, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 76.6952, "matched_fragments": 264, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter litoralis", "strain": "strain=SM1979", "accession": "GCA_009496005.1", "taxid": 2662264, 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sp000814025", "ani": 78.372, "matched_fragments": 483, "total_fragments": 1737, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tateyamaria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001969365.1", "gtdb_species": "s__Tateyamaria omphalii_A", "ani": 78.3512, "matched_fragments": 494, "total_fragments": 1737, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tateyamaria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007995245.1", "gtdb_species": "s__Tateyamaria sp007995245", "ani": 78.2494, 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364, "total_fragments": 1737, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000620505.1", "gtdb_species": "s__Ascidiaceihabitans sp000620505", "ani": 77.859, "matched_fragments": 431, "total_fragments": 1737, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005887615.1", "gtdb_species": "s__Sulfitobacter_E sabulilitoris", "ani": 77.6835, "matched_fragments": 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