{ "type": "genome", "identifier": "GCF_019966515.1", "organism": "Roseovarius aestuarii", "title": "Roseovarius aestuarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019966515.1", "bioproject": "PRJNA224116", "biosample": "SAMN20953794", "wgs_master": "JAIMIB000000000.1", "refseq_category": "reference genome", "taxid": "475083", "species_taxid": "475083", "organism_name": "Roseovarius aestuarii", "infraspecific_name": "strain=KCTC 22174", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/14", "asm_name": "ASM1996651v1", "asm_submitter": "Second Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_019966515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/966/515/GCF_019966515.1_ASM1996651v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4755878", "genome_size_ungapped": "4755878", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019966515.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "4608", "protein_coding_gene_count": "4506", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-14", "dateModified": "2021-09-14", "datePublished": "2021-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius aestuarii" ], "sample_taxid": [ "475083" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yellow Sea coast" ], "sample_host_location_id": [], "data_size": "1.351 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4755878", "Number of Sequences": "59", "Longest Sequences (bp)": "662973", "N50 (bp)": "188589", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.0", "Number of CDSs": "4549", "Average Protein Length": "306.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius aestuarii", "strain": "strain=KCTC 22174", "accession": "GCA_019966515.1", "taxid": 475083, "species_taxid": 475083, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1548, "total_fragments": 1551, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=DSM 29589", "accession": "GCA_900142665.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 78.5861, "matched_fragments": 457, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius faecimaris", "strain": "strain=MME-070", "accession": "GCA_009762325.1", "taxid": 2494550, "species_taxid": 2494550, "relation_to_type": "type", "validated": true, "ani": 78.5666, "matched_fragments": 497, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 78.527, "matched_fragments": 461, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 78.4039, "matched_fragments": 440, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3632, "matched_fragments": 417, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3539, "matched_fragments": 416, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3531, "matched_fragments": 413, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 78.2488, "matched_fragments": 410, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 78.0766, "matched_fragments": 392, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius lutimaris", "strain": "strain=DSM 28463", "accession": "GCA_900115165.1", "taxid": 1005928, "species_taxid": 1005928, "relation_to_type": "type", "validated": true, "ani": 77.9514, "matched_fragments": 442, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.8983, "matched_fragments": 337, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 77.7885, "matched_fragments": 351, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 77.7498, "matched_fragments": 316, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 77.6444, "matched_fragments": 275, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=DSM 29619", "accession": "GCA_900112545.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 77.6363, "matched_fragments": 282, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 77.6024, "matched_fragments": 345, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=CGMCC 1.7292", "accession": "GCA_900109195.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 77.5824, "matched_fragments": 285, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marina", "strain": "strain=CGMCC 1.9108", "accession": "GCA_900101475.1", "taxid": 639004, "species_taxid": 639004, "relation_to_type": "type", "validated": true, "ani": 77.5411, "matched_fragments": 337, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, 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"type", "validated": true, "ani": 76.6474, "matched_fragments": 144, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 76.4908, "matched_fragments": 145, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900172285.1", "gtdb_species": "s__Roseovarius aestuarii", "ani": 99.9993, "matched_fragments": 1550, "total_fragments": 1551, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": 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