{ "type": "genome", "identifier": "GCF_019966545.1", "organism": "Heliomarina baculiformis", "title": "Heliomarina baculiformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_019966545.1", "bioproject": "PRJNA224116", "biosample": "SAMN20953793", "wgs_master": "JAIMIC000000000.1", "refseq_category": "reference genome", "taxid": "2872036", "species_taxid": "2872036", "organism_name": "Heliomarina baculiformis", "infraspecific_name": "strain=T40-3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/14", "asm_name": "ASM1996654v1", "asm_submitter": "Second Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_019966545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/966/545/GCF_019966545.1_ASM1996654v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5333784", "genome_size_ungapped": "5333684", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_019966545.1-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "5036", "protein_coding_gene_count": "4946", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-14", "dateModified": "2021-09-14", "datePublished": "2021-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Heliomarina baculiformis" ], "sample_taxid": [ "2872036" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean: Southwest Indian Ridge" ], "sample_host_location_id": [], "data_size": "1.503 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5333784", "Number of Sequences": "36", "Longest Sequences (bp)": "757526", "N50 (bp)": "471812", "Gap Ratio (%)": "0.001875", "GCcontent (%)": "60.1", "Number of CDSs": "5008", "Average Protein Length": "319.1", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, 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78.5466, "matched_fragments": 339, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.5268, "matched_fragments": 526, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter italicus", "strain": "strain=CECT 7645", "accession": "GCA_001404195.1", "taxid": 481446, "species_taxid": 481446, "relation_to_type": "type", "validated": true, "ani": 78.5223, "matched_fragments": 341, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter italicus", "strain": "strain=DSM 26436", "accession": "GCA_900113345.1", "taxid": 481446, "species_taxid": 481446, "relation_to_type": "type", "validated": true, "ani": 78.4988, "matched_fragments": 340, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 78.402, "matched_fragments": 447, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.3327, "matched_fragments": 429, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3271, "matched_fragments": 517, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { 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77.3478, "matched_fragments": 300, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=CECT 7557", "accession": "GCA_001458415.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 77.309, "matched_fragments": 292, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=DSM 26470", "accession": "GCA_900112515.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 77.2875, "matched_fragments": 291, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 77.1218, "matched_fragments": 291, 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