{
    "type": "genome",
    "identifier": "GCF_019972815.1",
    "organism": "Lactobacillus huangpiensis",
    "title": "Lactobacillus huangpiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeast Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019972815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00326017",
        "wgs_master": "BPPA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2799571",
        "species_taxid": "2799571",
        "organism_name": "Lactobacillus huangpiensis",
        "infraspecific_name": "strain=F306-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/16",
        "asm_name": "ASM1997281v1",
        "asm_submitter": "Northeast Agricultural University",
        "gbrs_paired_asm": "GCA_019972815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/972/815/GCF_019972815.1_ASM1997281v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1901853",
        "genome_size_ungapped": "1901853",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "21",
        "contig_count": "21",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019972815.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "1886",
        "protein_coding_gene_count": "1804",
        "non_coding_gene_count": "58",
        "pubmed_id": "35142603"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-16",
    "dateModified": "2021-07-16",
    "datePublished": "2021-07-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus huangpiensis"
        ],
        "sample_taxid": [
            "2799571"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.535 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1901853",
        "Number of Sequences": "21",
        "Longest Sequences (bp)": "405279",
        "N50 (bp)": "207651",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "1833",
        "Average Protein Length": "299.6",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactobacillus huangpiensis",
                "strain": "strain=F306-1",
                "accession": "GCA_019972815.1",
                "taxid": 2799571,
                "species_taxid": 2799571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 623,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus laiwuensis",
                "strain": "strain=F551-2",
                "accession": "GCA_019972835.1",
                "taxid": 2841034,
                "species_taxid": 2841034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.4201,
                "matched_fragments": 514,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus apis",
                "strain": "strain=CCM 8403",
                "accession": "GCA_014635365.1",
                "taxid": 303541,
                "species_taxid": 303541,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4326,
                "matched_fragments": 224,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus apis",
                "strain": "strain=LMG 26964",
                "accession": "GCA_002837055.1",
                "taxid": 303541,
                "species_taxid": 303541,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3095,
                "matched_fragments": 199,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus bombicola",
                "strain": "strain=H70-3",
                "accession": "GCA_002916915.1",
                "taxid": 1505723,
                "species_taxid": 1505723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8467,
                "matched_fragments": 174,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus bombicola",
                "strain": "strain=R-53102",
                "accession": "GCA_900112665.1",
                "taxid": 1505723,
                "species_taxid": 1505723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8016,
                "matched_fragments": 176,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus intestinalis",
                "strain": "strain=DSM 6629",
                "accession": "GCA_024397795.1",
                "taxid": 151781,
                "species_taxid": 151781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0859,
                "matched_fragments": 105,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens subsp. kefirgranum",
                "strain": "strain=DSM 10550",
                "accession": "GCA_001434195.1",
                "taxid": 190906,
                "species_taxid": 267818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.986,
                "matched_fragments": 86,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus hamsteri",
                "strain": "strain=DSM 5661",
                "accession": "GCA_001434515.1",
                "taxid": 96565,
                "species_taxid": 96565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9418,
                "matched_fragments": 113,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus hamsteri",
                "strain": "strain=JCM 6256",
                "accession": "GCA_000615445.1",
                "taxid": 96565,
                "species_taxid": 96565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9338,
                "matched_fragments": 110,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus pasteurii",
                "strain": "strain=DSM 23907",
                "accession": "GCA_001433915.1",
                "taxid": 872327,
                "species_taxid": 872327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9144,
                "matched_fragments": 67,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_000159415.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8103,
                "matched_fragments": 95,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus gigeriorum",
                "strain": "strain=type strain: CRBIP 24.85",
                "accession": "GCA_000296855.1",
                "taxid": 1203069,
                "species_taxid": 1203069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8038,
                "matched_fragments": 86,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens",
                "strain": "strain=ATCC 43761",
                "accession": "GCA_900103655.1",
                "taxid": 267818,
                "species_taxid": 267818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8029,
                "matched_fragments": 90,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens subsp. kefiranofaciens",
                "strain": "strain=DSM 5016",
                "accession": "GCA_001435275.1",
                "taxid": 190905,
                "species_taxid": 267818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7769,
                "matched_fragments": 89,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_001436305.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7375,
                "matched_fragments": 92,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus gigeriorum",
                "strain": "strain=DSM 23908",
                "accession": "GCA_001436575.1",
                "taxid": 1203069,
                "species_taxid": 1203069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6432,
                "matched_fragments": 86,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus helveticus",
                "strain": "strain=CGMCC 1.1877",
                "accession": "GCA_001434945.1",
                "taxid": 1587,
                "species_taxid": 1587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5505,
                "matched_fragments": 91,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus hominis",
                "strain": "strain=type strain:CRBIP 24.179",
                "accession": "GCA_000296835.1",
                "taxid": 1203033,
                "species_taxid": 1203033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5426,
                "matched_fragments": 69,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus rodentium",
                "strain": "strain=DSM 24759",
                "accession": "GCA_024622425.1",
                "taxid": 947835,
                "species_taxid": 947835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4906,
                "matched_fragments": 66,
                "total_fragments": 624,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000760615.1",
                "gtdb_species": "s__Lactobacillus sp000760615",
                "ani": 96.9126,
                "matched_fragments": 554,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.94",
                "min_intra_species_ani": "96.94",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000967195.1",
                "gtdb_species": "s__Lactobacillus kullabergensis",
                "ani": 94.6121,
                "matched_fragments": 546,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.65",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014323605.1",
                "gtdb_species": "s__Lactobacillus kimbladii_B",
                "ani": 94.3926,
                "matched_fragments": 566,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016100975.1",
                "gtdb_species": "s__Lactobacillus sp016100975",
                "ani": 92.5826,
                "matched_fragments": 540,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000970755.1",
                "gtdb_species": "s__Lactobacillus kimbladii_A",
                "ani": 91.7206,
                "matched_fragments": 530,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000970855.1",
                "gtdb_species": "s__Lactobacillus helsingborgensis",
                "ani": 83.8239,
                "matched_fragments": 416,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.148,
        "cell_length": 0.354,
        "doubling_h": -0.086,
        "growth_tmp": 32.808,
        "optimum_tmp": 31.646,
        "optimum_ph": 6.027,
        "genome_size": 2295637.558,
        "gc_content": 40.393,
        "coding_genes": 2119.007,
        "rRNA16S_genes": 5.074,
        "tRNA_genes": 63.614,
        "gram_stain": 1.0,
        "sporulation": 0.009,
        "motility": 0.08,
        "range_salinity": 0.0,
        "facultative_respiration": 0.155,
        "anaerobic_respiration": 0.175,
        "aerobic_respiration": 0.668,
        "mesophilic_range_tmp": 0.977,
        "thermophilic_range_tmp": 0.022,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.983,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.016,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lactobacillus",
        "huangpiensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}