{
    "type": "genome",
    "identifier": "GCF_019972875.1",
    "organism": "Streptococcus thermophilus",
    "title": "Streptococcus thermophilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeast Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019972875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00393675",
        "wgs_master": "BPPS00000000.1",
        "refseq_category": "na",
        "taxid": "1308",
        "species_taxid": "1308",
        "organism_name": "Streptococcus thermophilus",
        "infraspecific_name": "strain=DSM 20617",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/07/21",
        "asm_name": "ASM1997287v1",
        "asm_submitter": "Northeast Agricultural University",
        "gbrs_paired_asm": "GCA_019972875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/972/875/GCF_019972875.1_ASM1997287v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2017459",
        "genome_size_ungapped": "2017459",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "84",
        "contig_count": "84",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019972875.1-RS_2024_09_03",
        "annotation_date": "2024-09-03",
        "total_gene_count": "2147",
        "protein_coding_gene_count": "1871",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-07-21",
    "dateModified": "2021-07-21",
    "datePublished": "2021-07-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus thermophilus"
        ],
        "sample_taxid": [
            "1308"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.575 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2017459",
        "Number of Sequences": "84",
        "Longest Sequences (bp)": "154503",
        "N50 (bp)": "54065",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.9",
        "Number of CDSs": "2137",
        "Average Protein Length": "263.7",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=DSM 20617",
                "accession": "GCA_019972875.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 631,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus thermophilus",
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                "accession": "GCA_010120595.1",
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                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9933,
                "matched_fragments": 636,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=ATCC 19258",
                "accession": "GCA_004354505.1",
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                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9865,
                "matched_fragments": 630,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus vestibularis",
                "strain": "strain=ATCC 49124",
                "accession": "GCA_000188295.1",
                "taxid": 1343,
                "species_taxid": 1343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1871,
                "matched_fragments": 496,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=NCTC 8618",
                "accession": "GCA_000785515.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.0834,
                "matched_fragments": 481,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=JCM 5707",
                "accession": "GCA_019972895.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.0643,
                "matched_fragments": 486,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus equi subsp. ruminatorum",
                "strain": "strain=CECT 5772",
                "accession": "GCA_000706805.1",
                "taxid": 254358,
                "species_taxid": 1336,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3428,
                "matched_fragments": 79,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus oriscaviae",
                "strain": "strain=HKU75",
                "accession": "GCA_018137985.1",
                "taxid": 2781599,
                "species_taxid": 2781599,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.568,
                "matched_fragments": 65,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010120595.1",
                "gtdb_species": "s__Streptococcus thermophilus",
                "ani": 99.9933,
                "matched_fragments": 636,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 130,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000188295.1",
                "gtdb_species": "s__Streptococcus vestibularis",
                "ani": 92.1871,
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                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "95.83",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_003521145.1",
                "gtdb_species": "s__Streptococcus sp003521145",
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                "matched_fragments": 435,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009738225.1",
                "gtdb_species": "s__Streptococcus sp001556435",
                "ani": 89.4629,
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                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.11",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 79,
                "status": "-"
            },
            {
                "accession": "GCF_000785515.1",
                "gtdb_species": "s__Streptococcus salivarius",
                "ani": 89.0901,
                "matched_fragments": 480,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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                "mean_intra_species_ani": "96.08",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 131,
                "status": "-"
            },
            {
                "accession": "GCF_010604095.1",
                "gtdb_species": "s__Streptococcus sp000187445",
                "ani": 88.0173,
                "matched_fragments": 467,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.94",
                "min_intra_species_ani": "96.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 19,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": -0.155,
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        "coding_genes": 1705.75,
        "rRNA16S_genes": 5.667,
        "tRNA_genes": 63.75,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
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        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Streptococcus",
        "thermophilus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}