{
    "type": "genome",
    "identifier": "GCF_019973735.1",
    "organism": "Arachnia rubra",
    "title": "Arachnia rubra",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nihon University School of Dentistry at Matsudo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019973735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00270488",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1547448",
        "species_taxid": "1547448",
        "organism_name": "Arachnia rubra",
        "infraspecific_name": "strain=SK-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/09",
        "asm_name": "ASM1997373v1",
        "asm_submitter": "Nihon University School of Dentistry at Matsudo",
        "gbrs_paired_asm": "GCA_019973735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/973/735/GCF_019973735.1_ASM1997373v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3316972",
        "genome_size_ungapped": "3316972",
        "gc_percent": "64.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019973735.1-RS_2024_11_06",
        "annotation_date": "2024-11-06",
        "total_gene_count": "3037",
        "protein_coding_gene_count": "2923",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-09",
    "dateModified": "2021-09-09",
    "datePublished": "2021-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Arachnia rubra"
        ],
        "sample_taxid": [
            "1547448"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Chiba, Matsudo, Sakaecho-Nishi"
        ],
        "sample_host_location_id": [],
        "data_size": "0.924 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3316972",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3316972",
        "N50 (bp)": "3316972",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.2",
        "Number of CDSs": "3024",
        "Average Protein Length": "324.2",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Arachnia rubra",
                "strain": "strain=SK-1",
                "accession": "GCA_019973735.1",
                "taxid": 1547448,
                "species_taxid": 1547448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1105,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Arachnia propionica",
                "strain": "strain=NCTC12967",
                "accession": "GCA_900637725.1",
                "taxid": 1750,
                "species_taxid": 1750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8738,
                "matched_fragments": 667,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arachnia propionica",
                "strain": "strain=NBRC 14587",
                "accession": "GCA_001592325.1",
                "taxid": 1750,
                "species_taxid": 1750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7975,
                "matched_fragments": 659,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Pseudopropionibacterium] massiliense",
                "strain": "strain=Marseille-P6184",
                "accession": "GCA_900607225.1",
                "taxid": 2220000,
                "species_taxid": 2220000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5829,
                "matched_fragments": 651,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tessaracoccus flavescens",
                "strain": "strain=SST-39T",
                "accession": "GCA_001998865.1",
                "taxid": 399497,
                "species_taxid": 399497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0201,
                "matched_fragments": 220,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tessaracoccus rhinocerotis",
                "strain": "strain=YIM 101269",
                "accession": "GCA_007197885.1",
                "taxid": 1689449,
                "species_taxid": 1689449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9771,
                "matched_fragments": 235,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tessaracoccus lapidicaptus",
                "strain": "strain=IPBSL-7",
                "accession": "GCA_001693815.1",
                "taxid": 1427523,
                "species_taxid": 1427523,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8244,
                "matched_fragments": 219,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aestuariimicrobium ganziense",
                "strain": "strain=YIM S02566",
                "accession": "GCA_015352975.1",
                "taxid": 2773677,
                "species_taxid": 2773677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2948,
                "matched_fragments": 150,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Naumannella halotolerans",
                "strain": "strain=DSM 24323",
                "accession": "GCA_004364645.1",
                "taxid": 993414,
                "species_taxid": 993414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0201,
                "matched_fragments": 83,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus antarcticus",
                "strain": "strain=DSM 11053",
                "accession": "GCA_014193425.1",
                "taxid": 53388,
                "species_taxid": 53388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7993,
                "matched_fragments": 108,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides zhouii",
                "strain": "strain=HLT2-9",
                "accession": "GCA_004137345.1",
                "taxid": 1168729,
                "species_taxid": 1168729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4081,
                "matched_fragments": 101,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia douganii",
                "strain": "strain=Sa1BUA8",
                "accession": "GCA_015142735.1",
                "taxid": 2762210,
                "species_taxid": 2762210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0676,
                "matched_fragments": 78,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia rustica",
                "strain": "strain=Sa4CUA1",
                "accession": "GCA_014836555.1",
                "taxid": 2762237,
                "species_taxid": 2762237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0506,
                "matched_fragments": 66,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia merdavium",
                "strain": "strain=Sa2CUA9",
                "accession": "GCA_014836755.1",
                "taxid": 2762227,
                "species_taxid": 2762227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9033,
                "matched_fragments": 69,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018128325.1",
                "gtdb_species": "s__Arachnia rubra",
                "ani": 99.9986,
                "matched_fragments": 1103,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900637725.1",
                "gtdb_species": "s__Arachnia propionica",
                "ani": 82.8405,
                "matched_fragments": 665,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "97.26",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900607225.1",
                "gtdb_species": "s__Arachnia sp900607225",
                "ani": 82.575,
                "matched_fragments": 652,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905372155.1",
                "gtdb_species": "s__Arachnia sp905372155",
                "ani": 82.4809,
                "matched_fragments": 594,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013333945.2",
                "gtdb_species": "s__Arachnia sp013333945",
                "ani": 80.8973,
                "matched_fragments": 505,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003859805.1",
                "gtdb_species": "s__Arachnia propionica_C",
                "ani": 79.2856,
                "matched_fragments": 375,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001998865.1",
                "gtdb_species": "s__Arachnia flavescens",
                "ani": 78.0047,
                "matched_fragments": 221,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007197885.1",
                "gtdb_species": "s__Arachnia rhinocerotis",
                "ani": 77.9771,
                "matched_fragments": 235,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016714275.1",
                "gtdb_species": "s__Arachnia sp016714275",
                "ani": 77.7332,
                "matched_fragments": 223,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012514785.1",
                "gtdb_species": "s__Arachnia sp012514785",
                "ani": 77.2137,
                "matched_fragments": 106,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Arachnia",
        "rubra"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}